LOCUS       NM_001130568            4545 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribosomal RNA processing 7 homolog A (Rrp7a),
            mRNA.
ACCESSION   NM_001130568 XM_001077728 XM_343298
VERSION     NM_001130568.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4545)
  AUTHORS   Cui,W., Dai,X., Marcho,C., Han,Z., Zhang,K., Tremblay,K.D. and
            Mager,J.
  TITLE     Towards Functional Annotation of the Preimplantation Transcriptome:
            An RNAi Screen in Mammalian Embryos
  JOURNAL   Sci Rep 6, 37396 (2016)
   PUBMED   27869233
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4545)
  AUTHORS   Maserati,M., Dai,X., Walentuk,M. and Mager,J.
  TITLE     Identification of four genes required for mammalian blastocyst
            formation
  JOURNAL   Zygote 22 (3), 331-339 (2014)
   PUBMED   23211737
REFERENCE   3  (bases 1 to 4545)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473950.2.
            
            On or before Jul 28, 2008 this sequence version replaced
            XM_343298.3, XM_001077728.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079405.1, EV773869.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132304, SAMEA5760383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4545
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..4545
                     /gene="Rrp7a"
                     /gene_synonym="Cgi-96; RGD1311547"
                     /note="ribosomal RNA processing 7 homolog A"
                     /db_xref="GeneID:362967"
                     /db_xref="RGD:1311547"
     exon            1..119
                     /gene="Rrp7a"
                     /gene_synonym="Cgi-96; RGD1311547"
                     /inference="alignment:Splign:2.1.0"
     CDS             47..889
                     /gene="Rrp7a"
                     /gene_synonym="Cgi-96; RGD1311547"
                     /note="gastric cancer antigen Zg14"
                     /codon_start=1
                     /product="ribosomal RNA-processing protein 7 homolog A"
                     /protein_id="NP_001124040.1"
                     /db_xref="GeneID:362967"
                     /db_xref="RGD:1311547"
                     /translation="MVSRRKKQKAGGHEGSVPSPPGYSAVPVKFSEKQQASHYLYMRQ
                     HRVRQGTQSTWPANRTLFILNVPPYCTQESLSRCLSSCGTIKTVELQEKPDLAESPKE
                     PKSQFFHPKPVPGFQVAYVVFQKPGGVSAALNLKGPLLVSTESHPVKNGIHKWISDYE
                     DSVLDPEALRLEVDTFMEAYDKKIAEEETKAKEEEGVPDEEGWVKVTRRGRRPVLPRT
                     EAASLRVLEKERRKRARKELLSFYAWQHRETKMEHLAQLRKKFEEDKQRIELMRAQRK
                     FRPY"
     exon            120..262
                     /gene="Rrp7a"
                     /gene_synonym="Cgi-96; RGD1311547"
                     /inference="alignment:Splign:2.1.0"
     exon            263..388
                     /gene="Rrp7a"
                     /gene_synonym="Cgi-96; RGD1311547"
                     /inference="alignment:Splign:2.1.0"
     exon            389..506
                     /gene="Rrp7a"
                     /gene_synonym="Cgi-96; RGD1311547"
                     /inference="alignment:Splign:2.1.0"
     exon            507..604
                     /gene="Rrp7a"
                     /gene_synonym="Cgi-96; RGD1311547"
                     /inference="alignment:Splign:2.1.0"
     exon            605..803
                     /gene="Rrp7a"
                     /gene_synonym="Cgi-96; RGD1311547"
                     /inference="alignment:Splign:2.1.0"
     exon            804..4545
                     /gene="Rrp7a"
                     /gene_synonym="Cgi-96; RGD1311547"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gacggaacta cagctcccag cgatctctgc gctcccagtc ggcaagatgg tgtcacgcag
       61 gaagaaacag aaggctggcg gccacgaggg gagcgtaccg agcccaccag ggtattcagc
      121 tgttccagtc aagttctcag aaaagcagca ggcttctcat tacctctaca tgagacagca
      181 cagagttcgc caaggcaccc agtccacgtg gcctgccaat cggacccttt ttatcctcaa
      241 tgtgccccca tactgcacac aggagagcct gtctcgatgc ctgtcctcat gtggcaccat
      301 caagacagta gaactgcagg agaagcctga ccttgccgag agccccaagg agccgaagtc
      361 acagtttttt catcccaagc cggtgccggg ctttcaggta gcttatgtgg tgttccagaa
      421 gccaggtgga gtgtcagctg ctttgaacct gaagggccca ttgctggttt ctacagagag
      481 tcaccctgtg aagaacggga ttcacaagtg gatcagtgac tatgaagatt ccgtgctgga
      541 ccctgaggcc ctgaggctcg aagtagacac attcatggag gcctatgaca agaagatagc
      601 tgaggaggag actaaggcca aggaggagga gggggtccct gatgaggagg gctgggtgaa
      661 ggtcacccgc cggggccgca ggcctgtgct ccctcggaca gaagcagcca gcctgcgagt
      721 tctcgagaag gagagacgga agcgcgcccg aaaggagctg ctcagcttct acgcctggca
      781 gcaccgcgag accaagatgg agcatttagc acagctgcga aagaagttcg aggaagacaa
      841 gcagaggatt gaactgatgc gtgcccagcg caaattccgg ccctactgag ctgttctggc
      901 catggccact ggagagcagg cttcacgaac agaaagacca gcaggcctgg tcccccaggg
      961 accatgttct gggaagaaga taccagacca gggagtagct gtttcccaca gtcctatctc
     1021 tgcacccaca caggctagag gtgaagggca gggctgctcg gaggaggatt tgcccttcac
     1081 agagctgcct ctgccctctc ctgcctgtaa aacactcccg ggaccatgct tgccctccat
     1141 gaagcccctg ctggcatcag ccacttggaa cacggtgaag gtgggagatg attttatttc
     1201 cacacagctg gtaaggggct ccagaagcct ctgagcccag aggaccagcc ctcagccctg
     1261 cttccttaac accagctcac caagcttacc caacacccca gtccccttct caaaatcaca
     1321 gataagaccg gcatccttcc cctaccccta gctctgctgt agaattctct gctgcctctc
     1381 ctggtcttca agccccatga gactcatgcc cacccccacc gattttgtgg gatgagagcg
     1441 cttatgatgt ggaggcagct gggaagtgtg aacaagattc cagagctaca gcctggaagg
     1501 ggttgtcctc ggtgggccct gtaggaagga gcggatgatg tcagccacga tctggggctt
     1561 gttcatgtgg atgtagtgat tgcctgggat ttccacaaac tggaaccgct ggagaaaggg
     1621 aacaggtggt gagacactgc cccactgccc ccaggtgtgt cagaggcaac ctctgactgg
     1681 cccttgtcta gtcatagtac cctggggact cagaggctgt caaagggaca taggcatctg
     1741 agctatgaag ctactgtata tattaaacca gggcagcgat agtcggggtc actgccctca
     1801 aagaaaggct actgcaggag cttgcccaat aggagagccc tctcccaccc ccactttgtg
     1861 atagcatcaa actgtgtaga gatctgggcc tagattctag gttctaagtg gtaaagacca
     1921 cgaagggcca ggacccacac aggcctcccc tactctgtag ccataacact tgtcagtgca
     1981 cgtcccggga gcagtagagg aggtgcacct cagaattaag ccaggcccag ggttaggtgg
     2041 agacaataaa cagaatcctg ccaccaaaag ctgtctctcc agatgtgact ccatgttcca
     2101 tgtgtctggg gactagccac agagggatac gacctgccgg ctacttggat ctggaatgtg
     2161 ccaacccagg agatccaaag gaattgaggg gctgtatgaa gtggggttca gagcagatac
     2221 atccccaacc catcagcttc ctggccacac agcttacctc ctttagggtg gatcgtagaa
     2281 tgtccagcat gaggaggaag gacgccttat tcaaatcgtt ctcccgtctc acgtcgtagt
     2341 acccgtccag tgctctgggc agcgagaagt tgggatgccc cctagctctg tgtcttgata
     2401 gcccctctgc cttgcctggg tctcaggccc tgaagaggcc aagcctaggc cgccccctag
     2461 atttccttca gctgtaccct tttgagccta gtcatccggt accagctttc tcttagcgct
     2521 ggtagcaggc tagcccaaac tgaatggctg ctgaaggtgg ctcgcagtgc tatggaaggg
     2581 ccgggttctg ctgggctggg atctcaaggc caggctttca tttaaaacaa agcctattga
     2641 gatggaatga atttgtacaa ccaccccgaa accccacccc acccccgtta aaggacgcta
     2701 tctacagcct acccagattt gcccagcctt gccatgctcg ccccagtcct gagttacaga
     2761 tgtgagccat catgcccagc cagttccatg gttttgagtt cagaaatttc agcaaatgct
     2821 ttgatgtatg aaagcattaa catgtcctca gacttcacaa tgagttgaaa gttctaagaa
     2881 aagcactgag catcctagca cagccactgg tgagcatcag attctgccca gatttcctgg
     2941 ctgcggctgc ggtgccaagc accgtggaaa gaactagtta gaccacctat gctgccagcc
     3001 caggaagagt tcctggatgt gtagacagtc ctgccgtgac ccactggtca ttgcggttaa
     3061 tttggccagt ctggctaggg gtgtgccccc tcctcgtcac tccttaggcg gtgcagagga
     3121 cagtccttcc caagagagta ggccttatta acgggctccc aggattgccc gtgcagttct
     3181 acaaagcaca tcctgctctc tctcagcatg aggacacgga attggtcacc acaagatagg
     3241 ggtccccaga gaccagctga gtcatggtgc catccttacc ctgtccccta ctcccaggca
     3301 cctgctgata aagatgtttc cgggaaaggc tgactgagca gcggtgccac actgggagaa
     3361 ctggacactg tgccaggctc ctccctagag cttcctggtg tctgggtctg tcaggggtgc
     3421 tgggtctaga ctcacttgat tattaacacg ctggcctgca gcctcctcaa agagtgcata
     3481 gtcagctcct tgcccatgaa gtcaaagctg tactgtggct gcagggacaa aaccagggtg
     3541 actcttgcca tgaagccctg tgagctccca caggcagggt aactaggcca gctgggccac
     3601 cggtcccagg aggccaatgt ccaccaattc attactcaaa gcctcttgtt ttccatccac
     3661 caaagtcccg cccaccccaa cccccgagcc attcttccct cttgttggga tcatagccac
     3721 ccagccagag tccactcaca gaacccctta cagtgggtgt ggctgttggt ggaggcagag
     3781 aagcaatgga ggttacttca ggactctttc agggctgtgg agtcccctgc agacccttcc
     3841 cagagcacag tccagcttcc agctctgggc tctgcgccaa gtggagcccg tccctttgag
     3901 accacttcca catcacacta tgttctggac cacatcgcag tgagtccacc agacctgtgt
     3961 ctccacctag ctctgcctgc tctgtccttg ctgtttagca tgtagtggcc aacatagagg
     4021 cctccagtcc catgcagcta cagacgggta ctgtaggtgt gatgtgtatg ctagaatcag
     4081 gagactttgt aggggaaatt atgtagtaag taaaatacaa gatgtagtta tagtggactg
     4141 aggatgtagg tcagtggtag atagcactgg gtcctagtat ctgataccca gtctcaaaat
     4201 tcactcctgg gctggagaga tggctcagcg attaaaagca ctgactgctc ttccagaggt
     4261 cctaagttga attcccagca agcacataat ggctcacaac catctgtagt gggatctgat
     4321 gccctcttct ggtgtctgaa gacagcaact gggtactcct atacatacat ataataaaat
     4381 ctttaaaaag aacaaaaaga aaaaaaaaca aagtaaaccc aacaacaaca agaaaaacaa
     4441 cagggcatgt gtgtgacagt cccataatct cagctgtcaa gaggcaggaa taggtagaca
     4501 gttggagttt gatggccagc cagcttaacc cattggaaaa gttcc
//
