LOCUS       XM_006244573            2584 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ribosomal RNA processing 36 (Rrp36),
            transcript variant X3, mRNA.
ACCESSION   XM_006244573
VERSION     XM_006244573.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006244573.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2584
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2584
                     /gene="Rrp36"
                     /note="ribosomal RNA processing 36; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 21
                     ESTs, 3 long SRA reads, 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 66 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100360664"
                     /db_xref="RGD:2321693"
     CDS             219..851
                     /gene="Rrp36"
                     /codon_start=1
                     /product="ribosomal RNA processing protein 36 homolog
                     isoform X3"
                     /protein_id="XP_006244635.1"
                     /db_xref="GeneID:100360664"
                     /db_xref="RGD:2321693"
                     /translation="MSFEELLRLQSQVKPKTSKQLVAGNNTKTQSPRQPACVSDKHRP
                     LEMSAKVPVPFLRQVVPISKKVARDPRFDDLSGEYNPEVFDKTYQFLNDIRAKEKQLV
                     KRQLKKHRSGEKHEKLQQLLQRMEQQEMAQQERKQQQELRLALKQERRALAQQGHRPY
                     FLKKSEQRQLALAEKFKDLKRSKKLESFLSRKRRRNAGKDRRHLPLSKEH"
ORIGIN      
        1 gaagttgcgc gtttatcaac cggactacgc aaaacatgcg aaaagaaggt tgtaatgcta
       61 aggctcgggc cgacggtccc caccgtgcca cgaagggcgg ggatgcgatt ggcgaccggc
      121 cgaagggttt agaagtgcgg gatgcagcaa actgaactgg atgcatgctt ggaaataaag
      181 gataatcaaa cagcaaagca aaaacagaca catctgacat gtcatttgag gagctgttga
      241 gattacagag ccaagtgaaa cccaagacat ccaaacaatt ggtagctgga aacaacacta
      301 aaacccaaag ccccagacaa ccagcgtgtg tctccgataa gcaccggcct ctggaaatgt
      361 cagccaaagt ccccgtaccg ttcttgcgcc aggtggttcc catcagcaaa aaggtcgccc
      421 gggacccccg ctttgatgat ctgtcagggg aatataaccc tgaagtgttt gacaaaactt
      481 accagttcct gaatgacatc cgggccaagg agaaacagct tgtgaaaagg cagctgaaga
      541 agcaccgctc aggggagaag catgagaagc tgcagcagct gcttcagcgg atggagcagc
      601 aggaaatggc gcagcaggag cgcaagcagc agcaggagct gcgcttggcc ttgaagcaag
      661 agcggcgggc tctggcccag caaggccatc ggccatactt cctgaagaaa tctgagcagc
      721 gccagctggc cctagctgag aagttcaagg acctaaaacg cagcaagaag ctggagagtt
      781 tcttgagtcg aaagaggcgc cggaatgcag gcaaagacag gagacatctc cctctgagca
      841 aggagcactg aggaaggaac tgtcccagac acctggatct gtgggacaag tctggggttg
      901 gccagttctg gttctttgct gcacagaggc aagcaggaca tctgccactg atctgggctg
      961 actcagaagg ctcttagact gtgttaggac tgcaagcagc aggcctgcag cctttctggg
     1021 atctggtctg tgaatatctg gtctcatgtt ctcatcccag ccttgcctta agccagtgac
     1081 tcaaatgaga aggggtgtgg gctgtggtca tgtgagcttt cagggcaggg acttcatgta
     1141 agagccactt acatggaaac gtacttgttt ctccttgttt tattctgttt cattgttgtt
     1201 tggttttcaa gacggggttt gtctacagcc ctggctgtcc tggaactccc tctgtagccc
     1261 aggctggcct caaactcact gcctgcctct gcctcccaag gtgtgtgtca gcactgctcg
     1321 gcggctgctg ctgctgctgc tgctgctgct gtctgttgct cttcagttgt gtgtacgtgt
     1381 ctgtgtgggt ttgcgcatgg ctgcagggac ctttggtgca gcatcgactt cccggtggag
     1441 ctggagtcac agtgcttgtg agctgtccag tgcgggttct ggggaccaag ctcgagtcct
     1501 ctgtaagagt agaacacact gactctctga accatctcta cagcccctgt ttttgttttt
     1561 aatgggagcc ctagaactgt tgtttcagtg ggctgtgtgt gtggatctac agtgtgaaaa
     1621 gtcagatcag ggggccctct ctccatctta aatctgggcc ctgaaaagat gtctaagggg
     1681 tgaatcagcc ctaccggtga cagagtggga cgtgggaggt agcgtgttag tcagttttgc
     1741 tagcgtatcc ctgcgaggcc tcaggccatg gccattggct cccgtgcttc agggcccatg
     1801 tgtagtaagg cagagcctca gctgcagcag tgtcctgcct catgtccgga ttgtgtgtca
     1861 tcagtgacac accctgggga cattctgtat aaaggatgtc actatgattg tccgtgtgtg
     1921 tcttggttag ctttctactt tttttttttt ggttcttttt tttttttcgg agctggggac
     1981 cgaacccagg gccttgcgct tcctaggcaa gcactctacc actgagctaa atccccagcc
     2041 ccagctttct acttctacca aaagcagtct ggggaggaaa gggtttattt tatcttacgg
     2101 cttgtagctc accatgaagg gaagtcaggg gaagaattca ggcaggaaca gaatagaggc
     2161 cagggaggga ctctgcctac tggcttgttc cccttggctt gcgtggtttt ctttcaattt
     2221 tctttccttt tttgttttta agtttgtcag gacatggttt ctcggtagcc atggctatcc
     2281 tgggacttac cttgtagacc aggctgtcct caatctgttt gcctctgcct cccaagtgct
     2341 gggattaaag gtgtgcgcca ccagtgcctg gcctcagcct gctttcttac actacccaga
     2401 ccagctgccc aggggaggta ccacccacag tgacctggac cctcttagat caaccatcag
     2461 tcaagagagt gtccaagatt cacctaaaga ccaaccctat agaagcatgc tccaagtaag
     2521 atttctcctc cccagagggc cctacctgtg tcaagtccac ataaaaacta attagttagt
     2581 tcaa
//
