LOCUS       NM_001399411            2526 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus ribosomal RNA processing 36 (Rrp36), transcript
            variant 2, mRNA.
ACCESSION   NM_001399411 XM_006244572
VERSION     NM_001399411.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2526)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 2526)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 2526)
  AUTHORS   Gerus,M., Bonnart,C., Caizergues-Ferrer,M., Henry,Y. and
            Henras,A.K.
  TITLE     Evolutionarily conserved function of RRP36 in early cleavages of
            the pre-rRNA and production of the 40S ribosomal subunit
  JOURNAL   Mol Cell Biol 30 (5), 1130-1144 (2010)
   PUBMED   20038530
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Jan 7, 2022 this sequence version replaced XM_006244572.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ218501.1, SRR21887622.3738959.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 5' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-146               JAXUCZ010000009.1  21806557-21806702
            147-288             JAXUCZ010000009.1  21808156-21808297
            289-355             JAXUCZ010000009.1  21808397-21808463
            356-460             JAXUCZ010000009.1  21808545-21808649
            461-535             JAXUCZ010000009.1  21811385-21811459
            536-653             JAXUCZ010000009.1  21811572-21811689
            654-2526            JAXUCZ010000009.1  21812688-21814560
FEATURES             Location/Qualifiers
     source          1..2526
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q12"
     gene            1..2526
                     /gene="Rrp36"
                     /note="ribosomal RNA processing 36"
                     /db_xref="GeneID:100360664"
                     /db_xref="RGD:2321693"
     exon            1..146
                     /gene="Rrp36"
                     /inference="alignment:Splign:2.1.0"
     CDS             56..793
                     /gene="Rrp36"
                     /note="isoform 2 is encoded by transcript variant 2;
                     ribosomal RNA processing protein 36 homolog; ribosomal RNA
                     processing 36 homolog; rCG43434-like"
                     /codon_start=1
                     /product="ribosomal RNA processing protein 36 homolog
                     isoform 2"
                     /protein_id="NP_001386340.1"
                     /db_xref="GeneID:100360664"
                     /db_xref="RGD:2321693"
                     /translation="MRKEGCNAKARADGPHRATKGGDAIGDRPKADTSDMSFEELLRL
                     QSQVKPKTSKQLVAGNNTKTQSPRQPACVSDKHRPLEMSAKVPVPFLRQVVPISKKVA
                     RDPRFDDLSGEYNPEVFDKTYQFLNDIRAKEKQLVKRQLKKHRSGEKHEKLQQLLQRM
                     EQQEMAQQERKQQQELRLALKQERRALAQQGHRPYFLKKSEQRQLALAEKFKDLKRSK
                     KLESFLSRKRRRNAGKDRRHLPLSKEH"
     exon            147..288
                     /gene="Rrp36"
                     /inference="alignment:Splign:2.1.0"
     exon            289..355
                     /gene="Rrp36"
                     /inference="alignment:Splign:2.1.0"
     exon            356..460
                     /gene="Rrp36"
                     /inference="alignment:Splign:2.1.0"
     exon            461..535
                     /gene="Rrp36"
                     /inference="alignment:Splign:2.1.0"
     exon            536..653
                     /gene="Rrp36"
                     /inference="alignment:Splign:2.1.0"
     exon            654..2526
                     /gene="Rrp36"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttgggcgctc gcagtgagcg gaagttgcgc gtttatcaac cggactacgc aaaacatgcg
       61 aaaagaaggt tgtaatgcta aggctcgggc cgacggtccc caccgtgcca cgaagggcgg
      121 ggatgcgatt ggcgaccggc cgaaggcaga cacatctgac atgtcatttg aggagctgtt
      181 gagattacag agccaagtga aacccaagac atccaaacaa ttggtagctg gaaacaacac
      241 taaaacccaa agccccagac aaccagcgtg tgtctccgat aagcaccggc ctctggaaat
      301 gtcagccaaa gtccccgtac cgttcttgcg ccaggtggtt cccatcagca aaaaggtcgc
      361 ccgggacccc cgctttgatg atctgtcagg ggaatataac cctgaagtgt ttgacaaaac
      421 ttaccagttc ctgaatgaca tccgggccaa ggagaaacag cttgtgaaaa ggcagctgaa
      481 gaagcaccgc tcaggggaga agcatgagaa gctgcagcag ctgcttcagc ggatggagca
      541 gcaggaaatg gcgcagcagg agcgcaagca gcagcaggag ctgcgcttgg ccttgaagca
      601 agagcggcgg gctctggccc agcaaggcca tcggccatac ttcctgaaga aatctgagca
      661 gcgccagctg gccctagctg agaagttcaa ggacctaaaa cgcagcaaga agctggagag
      721 tttcttgagt cgaaagaggc gccggaatgc aggcaaagac aggagacatc tccctctgag
      781 caaggagcac tgaggaagga actgtcccag acacctggat ctgtgggaca agtctggggt
      841 tggccagttc tggttctttg ctgcacagag gcaagcagga catctgccac tgatctgggc
      901 tgactcagaa ggctcttaga ctgtgttagg actgcaagca gcaggcctgc agcctttctg
      961 ggatctggtc tgtgaatatc tggtctcatg ttctcatccc agccttgcct taagccagtg
     1021 actcaaatga gaaggggtgt gggctgtggt catgtgagct ttcagggcag ggacttcatg
     1081 taagagccac ttacatggaa acgtacttgt ttctccttgt tttattctgt ttcattgttg
     1141 tttggttttc aagacggggt ttgtctacag ccctggctgt cctggaactc cctctgtagc
     1201 ccaggctggc ctcaaactca ctgcctgcct ctgcctccca aggtgtgtgt cagcactgct
     1261 cggcggctgc tgctgctgct gctgctgctg ctgtctgttg ctcttcagtt gtgtgtacgt
     1321 gtctgtgtgg gtttgcgcat ggctgcaggg acctttggtg cagcatcgac ttcccggtgg
     1381 agctggagtc acagtgcttg tgagctgtcc agtgcgggtt ctggggacca agctcgagtc
     1441 ctctgtaaga gtagaacaca ctgactctct gaaccatctc tacagcccct gtttttgttt
     1501 ttaatgggag ccctagaact gttgtttcag tgggctgtgt gtgtggatct acagtgtgaa
     1561 aagtcagatc agggggccct ctctccatct taaatctggg ccctgaaaag atgtctaagg
     1621 ggtgaatcag ccctaccggt gacagagtgg gacgtgggag gtagcgtgtt agtcagtttt
     1681 gctagcgtat ccctgcgagg cctcaggcca tggccattgg ctcccgtgct tcagggccca
     1741 tgtgtagtaa ggcagagcct cagctgcagc agtgtcctgc ctcatgtccg gattgtgtgt
     1801 catcagtgac acaccctggg gacattctgt ataaaggatg tcactatgat tgtccgtgtg
     1861 tgtcttggtt agctttctac tttttttttt ttggttcttt tttttttttc ggagctgggg
     1921 accgaaccca gggccttgcg cttcctaggc aagcactcta ccactgagct aaatccccag
     1981 ccccagcttt ctacttctac caaaagcagt ctggggagga aagggtttat tttatcttac
     2041 ggcttgtagc tcaccatgaa gggaagtcag gggaagaatt caggcaggaa cagaatagag
     2101 gccagggagg gactctgcct actggcttgt tccccttggc ttgcgtggtt ttctttcaat
     2161 tttctttcct tttttgtttt taagtttgtc aggacatggt ttctcggtag ccatggctat
     2221 cctgggactt accttgtaga ccaggctgtc ctcaatctgt ttgcctctgc ctcccaagtg
     2281 ctgggattaa aggtgtgcgc caccagtgcc tggcctcagc ctgctttctt acactaccca
     2341 gaccagctgc ccaggggagg taccacccac agtgacctgg accctcttag atcaaccatc
     2401 agtcaagaga gtgtccaaga ttcacctaaa gaccaaccct atagaagcat gctccaagta
     2461 agatttctcc tccccagagg gccctacctg tgtcaagtcc acataaaaac taattagtta
     2521 gttcaa
//
