LOCUS       XM_228076               4440 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ribosomal RNA processing 1B (Rrp1b),
            transcript variant X1, mRNA.
ACCESSION   XM_228076
VERSION     XM_228076.10
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 17, 2024 this sequence was replaced by
            NM_001427282.1.
            
            On Jan 21, 2021 this sequence version replaced XM_228076.9.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4440
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4440
                     /gene="Rrp1b"
                     /note="ribosomal RNA processing 1B; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 42 ESTs, 5 long SRA reads, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 197 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:309673"
                     /db_xref="RGD:1305633"
     CDS             70..2271
                     /gene="Rrp1b"
                     /codon_start=1
                     /product="ribosomal RNA processing protein 1 homolog B
                     isoform X1"
                     /protein_id="XP_228076.4"
                     /db_xref="GeneID:309673"
                     /db_xref="RGD:1305633"
                     /translation="MAPAMQSTELQFAQRLASSEKGVRDRAVRKLRQYLSARTQSDTG
                     SFSQEELLKIWKGLFYCMWVQDEPLLQEELANIISQLIHVVNSSEAQHLFIQTFWQTV
                     NREWQGIDKLRLDKYYMLIRLVLRQSFEVLKRNAWEESQITLFLDILMKEILSPESRS
                     PNGVRSHLIDVYLDELSTVGGRELLADQNLKLIDPFCRIAAKTKDHTLVQTVAKGVFE
                     VIVDQSAFVPEESVEEQKTKEDGNGLPANELACQKVVGGKKTALDECLRDGVIGSRER
                     DICAALKDSGSPLQFDYKAVADRLLEIANSKSTPPFNRKRLCRLVRKFQDLSEGNGAQ
                     LSFAEDISAGENGQALSQRRHKRKRKKLLERAALEREEGNTVSAAGEEDGGGHIHKRK
                     RKKRKRSHFQSDTQDLGSVAEAAVPSADSEPGAAQRHALQACVAAPTAEATSNTRENS
                     SEPTPATPIHSKRKRQRKKNLRAHREIWKSTTLPQEDVSKNDPASGQPQTALISSSEG
                     GQARKRKRKLGALPVSSGDLTVQKAGTPASPVEGNDGQTTLPRCKRSQKKTASNTLDH
                     YDPSSQKTAISKKRKKMKQTSNGVLECSAGQIQALGSNRTLKKPLKMEDDLVKFDTRF
                     LPKALFFRKAKNSSATRPQGPTVQLNKTPSSSKKVTFGLNRNMTAEFKKTDKSILVSP
                     TGLSRVAFNPEQRPLHGVLKTPTSSPASTPLSTMKLPATTPKRRPRAADFF"
ORIGIN      
        1 gcaggcgcaa tccagatcgc tcggcggcta gccgcacgcg cgcagcccgg ggatgctgaa
       61 gcgggtgcga tggctcccgc catgcagtct accgagctcc agttcgcaca gcggctggcc
      121 tccagtgaga agggcgtccg cgaccgcgcc gtgaggaaac tgcggcagta tctcagcgca
      181 aggacgcaga gcgacacagg aagtttcagt caggaagaac tcctaaaaat atggaaagga
      241 ctcttctact gcatgtgggt gcaggacgaa ccccttctgc aggaggagct agcgaacatt
      301 atttcccaac tcatccacgt tgttaacagc tccgaggctc agcacctgtt tattcagacc
      361 ttctggcaga ccgtgaatcg agagtggcaa gggatagaca agctgcgact ggacaagtac
      421 tacatgctga tccgcctggt cctgaggcag tccttcgaag ttctcaagcg gaatgcctgg
      481 gaagagagcc aaatcacact gtttctggac atcctgatga aggagatcct gagtcccgag
      541 agtcggtccc ccaacggagt gagatcccac ttgattgatg tgtacttgga tgagctctcc
      601 actgtgggag ggagagagct cttagctgat cagaacctca agttaatcga tccgttctgc
      661 agaattgctg ccaagactaa ggaccacacg ctggtacaga ctgtagcgaa gggtgtcttt
      721 gaagtcattg tagatcagtc tgcctttgta cctgaagagt ctgtggaaga gcagaaaacc
      781 aaagaggatg gcaatggcct ccctgcaaat gagctggcct gtcaaaaggt ggtcggtggg
      841 aagaagactg cactggacga atgcctcaga gatggagtca ttggcagcag agaaagagac
      901 atctgtgcag ccttgaaaga ttcagggtca cctctccagt ttgactataa ggctgttgct
      961 gatcgactcc tggagatcgc caactcgaag agcacccctc ccttcaacag gaagcgactc
     1021 tgcagactag tcagaaagtt ccaggacctc tctgaaggca atggtgctca acttagtttt
     1081 gctgaggata tttctgctgg tgaaaatggt caagccctca gtcagagaag gcacaagagg
     1141 aagagaaaga agcttttaga gagagctgct ttagaacggg aggaaggaaa cacagtctct
     1201 gctgctggtg aagaggacgg cgggggtcac attcacaaga ggaaaaggaa aaagaggaaa
     1261 aggagccact tccagtctga cactcaggac ctgggttctg ttgccgaggc tgcagtacct
     1321 agtgctgaca gtgagcctgg tgccgcccag aggcatgcac tgcaagcctg cgtggcggcc
     1381 cctacagcag aggccacatc caacaccagg gagaacagtt ccgagcctac acccgccacg
     1441 cccatccaca gtaaaaggaa acggcagaga aagaagaacc tgagggccca cagagagatc
     1501 tggaaatcca ccactctacc tcaggaggac gtgtcaaaga atgaccctgc cagtgggcag
     1561 cctcagactg ctctcatttc ttcctcagaa ggtggccaag cccggaaaag gaagcggaaa
     1621 ctcggagctc tccctgtcag tagtggtgac ctaaccgtac agaaggcagg tactccagca
     1681 agcccagtgg agggaaatga tggccagacc accctgcccc ggtgcaagag gtcacaaaag
     1741 aagacagcat ccaacaccct tgaccactat gatccgtcca gtcaaaaaac agcaatctca
     1801 aaaaagagaa aaaagatgaa gcagacgtcc aacggtgtgt tggagtgcag cgctgggcag
     1861 atccaagctc tgggaagcaa caggactctg aagaagccac tgaaaatgga ggacgacctt
     1921 gtgaagtttg acaccagatt cttaccaaag gccctgttct tcaggaaagc caagaacagc
     1981 tctgccaccc gtccccaagg tcctactgtc cagctgaata aaacaccctc cagttccaag
     2041 aaagtcacct ttggattgaa cagaaacatg acagcagaat ttaagaagac agacaagagt
     2101 atcctggtca gccccacggg cctctccaga gtggcattta accccgagca gaggccactc
     2161 cacggagtgt tgaagactcc cacaagctcc ccggccagca cgcctctatc aaccatgaag
     2221 ctaccagcaa ctaccccaaa gagaaggcca agggctgcgg acttcttctg agagccagaa
     2281 tcccttttgg aggactgctt ttatactgga tattctataa attataactt ttaaatgtgg
     2341 gctttttaat tattttacaa atatccatga atgggacaat gttttgaacc tggactgcag
     2401 gccactcctg ctaggcttgc agccatggtt cctgtctgag tccacgcaca ccctcaccag
     2461 aaggactagg tgctgttggt acatggagcc ccctcggtgc ccattgctgc acctgccaca
     2521 gtagattgcc ttcctgggca tctgctgtct cagtctatct ccttgtgaaa gcatgtcagc
     2581 ctcaggcacg tctgggcatt tggctgtttg tcctggcgat gactcttgga actgaatgag
     2641 caatggtgta gcttttctac gggtgaccag caggagggtg ggcaggtgtg aggtggggaa
     2701 agccacttat ccacgaggct tttcctcctc tgcctggcct gtccctgtcc ctgtcttcct
     2761 acctctatag caagcccaaa gtgtcttttc cggagggcca gtgcccccca ggctgctgcc
     2821 cacgttagca cattgtcttc ccaggcctca ggcacagttc ctaactgtga gtgagcctag
     2881 ggcctccctg actgcaccag cggtgtctgg accccaggtt cttgcctgac tgggaagtcg
     2941 gccgcccagg aggggatgca ctcccagctg tctgttacct gcctccacgc atttaacttg
     3001 gtgcagaacc cagggagcca ctcaggcttc catccaaaca aatctggctc ctcctctaga
     3061 gcaaggccta cttggcaatt gctcttgtta aaggaaacca ccttgggtct gagggatgga
     3121 gaggcctcag aattaagcac aacaggaggc ccagcacctg gttttaccat caggagctgc
     3181 tggcttgaca tggcaaggcc aaggccctat atctcaaagt cctatccatt tgcctactgt
     3241 gctcagggca tccccaggtc tgtcttactc tgtgcaccct gtgcaggagc cccactttaa
     3301 gcaccgctgc tcctcagtag agggtagcag ctcactgcca atgggatcgc agagttcagg
     3361 caccacctct ggcctcgcct cacacagtca aaggtccacg tccaagtctt gaaccagctg
     3421 actcctaaat gccattcccg atgggagtga agcagtgact ttgtcctttg cctgctcagt
     3481 cataaagtat accactaggc cataaggatg gaggtaacgc cttactaacg tcacagtagg
     3541 tcatgcgcag tgtaacgtgc ctggttacag catgctgggt ttacgttcaa agctgacacc
     3601 tgtctacgaa ggttagggtc aaggcagcaa acgcctcgct tcctatttta aaagttcact
     3661 cactgagccc agccctcttc tctgttttaa agatggggta acagagccaa gtgggtcata
     3721 cagcccagcg gtgtggagca gtacaccagg cggcagggat agaatcaacc tcgcaccgtt
     3781 ttcacgatgg cagcccatcc tcaggaaccg tgagtgttct gggagcacac ctaccaaatt
     3841 gcttccagga cggagggtta gacctcagtg ctgggcacag gtgggcaccg ccatgcctag
     3901 cagaaaagat ttctgtttat ctctcatgca cagcacagga aggctctgcc atgtgaagga
     3961 gtgctttaga atgccgtcct ggtccttggt gcagatcatt ttctcaattc cttcttcaaa
     4021 tccagagaag caaatcttag tgctggtgac cgggttgatt tttggtaaaa gactatctcc
     4081 atccttagta tgagttgtga tcggttctgc acaattcggt ttcaaactta cctttttctt
     4141 tccctttaaa aacaacaaga accaaggttt ccttatgtat cctatcccat actggtccca
     4201 cactggtggt cctcctgcct cagccttgct agggctggga cacagtatca cctttctgaa
     4261 cagaagcaca gaagtagcat gagggggatt gggaaacagt tgcctgcctg ggaagtgggt
     4321 ctgtgttctc tctaactgcc gcagttctgt ttgtttacca tcaaattgta tcggtgtctc
     4381 cagggcttgg cggtacaaat caaagccaag accaattaaa agaaatgttt ttatctttgg
//
