LOCUS       NM_001401227            4336 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ribosomal RNA processing 12 (Rrp12), mRNA.
ACCESSION   NM_001401227 XM_003749118
VERSION     NM_001401227.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4336)
  AUTHORS   Zemp,I., Wandrey,F., Rao,S., Ashiono,C., Wyler,E., Montellese,C.
            and Kutay,U.
  TITLE     CK1delta and CK1epsilon are components of human 40S subunit
            precursors required for cytoplasmic 40S maturation
  JOURNAL   J Cell Sci 127 (Pt 6), 1242-1253 (2014)
   PUBMED   24424021
REFERENCE   2  (bases 1 to 4336)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 4336)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Feb 4, 2022 this sequence version replaced XM_003749118.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.722129.1,
                                           SRR26360176.726428.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-230               JAXUCZ010000001.1  250655089-250655318 c
            231-460             JAXUCZ010000001.1  250654299-250654528 c
            461-544             JAXUCZ010000001.1  250651364-250651447 c
            545-621             JAXUCZ010000001.1  250650296-250650372 c
            622-727             JAXUCZ010000001.1  250648518-250648623 c
            728-844             JAXUCZ010000001.1  250648214-250648330 c
            845-983             JAXUCZ010000001.1  250645247-250645385 c
            984-1111            JAXUCZ010000001.1  250645036-250645163 c
            1112-1210           JAXUCZ010000001.1  250644313-250644411 c
            1211-1302           JAXUCZ010000001.1  250643671-250643762 c
            1303-1414           JAXUCZ010000001.1  250641936-250642047 c
            1415-1512           JAXUCZ010000001.1  250641631-250641728 c
            1513-1627           JAXUCZ010000001.1  250640374-250640488 c
            1628-1770           JAXUCZ010000001.1  250638503-250638645 c
            1771-1892           JAXUCZ010000001.1  250638234-250638355 c
            1893-1957           JAXUCZ010000001.1  250636938-250637002 c
            1958-2120           JAXUCZ010000001.1  250636693-250636855 c
            2121-2275           JAXUCZ010000001.1  250636193-250636347 c
            2276-2343           JAXUCZ010000001.1  250635936-250636003 c
            2344-2437           JAXUCZ010000001.1  250635397-250635490 c
            2438-2596           JAXUCZ010000001.1  250633537-250633695 c
            2597-2677           JAXUCZ010000001.1  250633349-250633429 c
            2678-2783           JAXUCZ010000001.1  250633052-250633157 c
            2784-2891           JAXUCZ010000001.1  250632744-250632851 c
            2892-3049           JAXUCZ010000001.1  250632178-250632335 c
            3050-3141           JAXUCZ010000001.1  250630966-250631057 c
            3142-3306           JAXUCZ010000001.1  250630653-250630817 c
            3307-3476           JAXUCZ010000001.1  250630366-250630535 c
            3477-3602           JAXUCZ010000001.1  250630049-250630174 c
            3603-3652           JAXUCZ010000001.1  250628290-250628339 c
            3653-3719           JAXUCZ010000001.1  250625893-250625959 c
            3720-3787           JAXUCZ010000001.1  250624764-250624831 c
            3788-3870           JAXUCZ010000001.1  250624366-250624448 c
            3871-4336           JAXUCZ010000001.1  250621707-250622172 c
FEATURES             Location/Qualifiers
     source          1..4336
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q54"
     gene            1..4336
                     /gene="Rrp12"
                     /note="ribosomal RNA processing 12"
                     /db_xref="GeneID:679127"
                     /db_xref="RGD:1591867"
     exon            1..230
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     CDS             92..3973
                     /gene="Rrp12"
                     /note="ribosomal RNA processing 12 homolog"
                     /codon_start=1
                     /product="RRP12-like protein"
                     /protein_id="NP_001388156.1"
                     /db_xref="GeneID:679127"
                     /db_xref="RGD:1591867"
                     /translation="MGRSGKLPSGVSAKLKRWKKGHSSDSNPTTCRHRQAARSRFFSR
                     PSGKSDLTVDAVKLHNELQSGTLSLGKSQAPETTMDQDPEVAFTEKSSGTFLSGLSDC
                     TNVTFSKVQRFWESNSAAHKEICAVLAAVTEVIRSQGGKETETEYFAALMTTMEAVES
                     PESLAAVAYLLNLVLKRVPSPVLMKKFSDTSKAFMNIMSAQASSGSTSALRWVLSCLA
                     ILLRKQDLEAWGYPITLQVYHGLLSFTVHAKPKVRKAAQHGVCSVLKGSDFMFGEEAP
                     AHHPAAVSTAKFCIQEIEKSGGSREATTTLHMLTLLKDMLPCFPEGLVKSCSETLLRV
                     MTLNHVLVTACAMQAFHNLFHAKPSPSTLSAELNAQIITALYDYVPSENDLQPLLAWL
                     KVMEKAHINLVRLQRDLGLGHLARFFGIAVTCLLSPHSQVVAAATQTLKEILRECVAP
                     HVADIGSVTSSASGPPQYIAKMFRAVEEGLTYRFHAAWSSVLQLLGVFFEACGKQAHP
                     VMKKCLQSLCDLRLSPHFPHTAALDQAVGAAVTSMGPEVVLQAVPLEIDGSEETLDFP
                     RSWLLPVIRDHVRETRLGFFTTYFLPLATALKRKAMDLAQAGSAVESKIYDTLQWQIW
                     TLLPGFCIRPTDVAASFKGLARTLGTAISERPDLRVTVCQALRTLITKGCEAEADRAE
                     VSRFAKNFLPILFNLYGQPVAAGEAEAPRRAVLETIKTYLTITESQLVNGFLEKATEK
                     VLDPASSDFTRLSVLDLVVALAPYSDEAAISKLYSTIRPYLESKVHGVQKKAYRVLEE
                     VCASSQGPAARFVQSHLDDLKKTLLDSLQSTSSPAKRPRLKCLIHIVKKLSAEHEEFI
                     AALIPEVILCTKEVSVGARKNAFTLLVEMGHAFLRFDSSQEEALQRYLVLIYPGLLGA
                     VTTVSCSILALTHLLFEFKGLMGTSTVEQLLENVCLLLASRTRDVVKSALGFIKVAVV
                     VMDVVHLAKHVQLVLEAIGKLSDDMRRHFRMKLRNLFIKFIRKFGFELVKDLLPAEYH
                     KVLVNIRKAETRAKKHRALSQAAMEEEEEEEEEKPVQSKGDSIEEILADSEDEDEEEE
                     RSQGKEQRKLARQRSRAWLKEGGGDEPLNFLDPKVAHRVLATQPGPGRGKKKDHGFKL
                     SADGRLIIREEEDGDKVEEEDVTKGEDEEMTDVMEDASVRSKKKLKRQREDEEDELEI
                     PPRYQAGGSGIHRPVAKKAAPGAEYKAKKAKGDVKRKGRLDPYAYVPLNRTKLNRRKK
                     VKLQGQFKGLVKAAQRGSQVGHKLHRKDRRP"
     exon            231..460
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            461..544
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            545..621
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            622..727
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            728..844
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            845..983
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            984..1111
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            1112..1210
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            1211..1302
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            1303..1414
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            1415..1512
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            1513..1627
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            1628..1770
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            1771..1892
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            1893..1957
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            1958..2120
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            2121..2275
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            2276..2343
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            2344..2437
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            2438..2596
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            2597..2677
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            2678..2783
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            2784..2891
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            2892..3049
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            3050..3141
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            3142..3306
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            3307..3476
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            3477..3602
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            3603..3652
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            3653..3719
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            3720..3787
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            3788..3870
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
     exon            3871..4336
                     /gene="Rrp12"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acacacgtgg gttctgctgt gagttctgct gtctcttcgg cgtggttgtt cgcgtgttct
       61 ctgagcaagt ccgagccacc gtttggtcaa catgggtcgc tcggggaaat tgccatctgg
      121 tgtctcggcc aagctgaagc gctggaagaa aggccacagc agcgacagca accccaccac
      181 ttgccgccat cgccaggccg ctcgcagccg cttcttcagc cgcccatcag ggaagagcga
      241 cctgacagtt gatgccgtga agttgcataa tgagctgcag tctgggacct tgagcctggg
      301 caaaagccaa gcccctgaga cgaccatgga ccaagacccg gaggtggctt tcactgagaa
      361 gtcctcgggc acatttctga gtggcttgtc tgactgtaca aacgtcacct tcagcaaagt
      421 gcagcgcttt tgggaatcca actcagctgc tcacaaggag atctgtgctg tcctggctgc
      481 tgtcacggag gtgattcgat cccagggagg caaggagacg gagactgagt actttgctgc
      541 tctgatgaca acaatggaag cagtggagtc cccagagtca ctggctgccg ttgcgtacct
      601 actgaacctt gtcctgaagc gtgtgccaag tcccgtgctc atgaagaagt tctccgatac
      661 ctccaaagcc ttcatgaata tcatgtctgc ccaggcgagc agtggctcca cctctgcgct
      721 ccgatgggtc ctctcctgcc tggccatcct ccttcggaag caagacctag aggcctgggg
      781 ctatcctatc acccttcagg tgtaccatgg actgctgagc ttcaccgtgc atgccaagcc
      841 gaaggtccga aaggctgctc agcatggggt gtgctcagtc cttaagggca gtgactttat
      901 gtttggagaa gaggcccccg cccatcaccc tgctgcggtc tccactgcca agttctgcat
      961 ccaggagatt gagaaatctg gaggctccag agaggccacc accacactgc acatgctaac
     1021 actgctgaag gacatgctgc cctgcttccc ggaaggcctg gtgaagagct gcagtgagac
     1081 tctgcttagg gtcatgacct tgaaccacgt gcttgtgaca gcctgtgcca tgcaggcctt
     1141 ccataacctc ttccatgcca agcccagccc tagcaccctg tccgcagagc tcaacgccca
     1201 gatcatcacg gcattatatg actacgttcc cagtgagaat gatttacagc ccttgctggc
     1261 ctggcttaag gtcatggaga aagctcacat caaccttgtc aggttgcagc gggacctggg
     1321 gctaggccat cttgctcggt tttttggaat tgcagtaacc tgtcttctct cccctcattc
     1381 acaagtggtg gcagctgcca cccagaccct caaggagatc ctgagggagt gtgtggctcc
     1441 acacgttgct gatattggct ccgtgacctc ttctgcctca ggccctcccc agtacatcgc
     1501 taagatgttc agggcagtgg aagagggcct aacatacaga tttcatgcgg cctggagctc
     1561 tgtgctgcag ctgctgggtg tcttctttga agcttgtgga aagcaggccc atcctgtgat
     1621 gaagaagtgc ctccagtccc tgtgtgacct gcgcctctcc cctcacttcc cccacacagc
     1681 agccttagac caggctgtgg gggctgcagt gaccagcatg ggaccagagg tggtgttgca
     1741 ggcggtgcct ttggaaatcg atggctctga ggagactctg gatttcccac ggagctggct
     1801 gctgcctgtc atccgcgatc atgttcggga aacacgactt gggtttttca ccacttattt
     1861 cttgcccttg gccaccgctc ttaagagaaa agcaatggac ctggctcagg caggaagtgc
     1921 agtggagtcg aagatttatg atacgctcca gtggcagatc tggaccctcc tgcctgggtt
     1981 ctgcataaga cccacagatg tggctgcctc cttcaaaggc ctggcccgga ctctgggcac
     2041 agctatcagt gaacgcccag acctgagggt cactgtgtgc caggccctgc gtaccctcat
     2101 caccaagggc tgtgaagcag aggctgaccg tgctgaagtg agccgctttg ccaaaaactt
     2161 cctgcccatc ctcttcaacc tgtatgggca gcctgttgca gctggagagg cagaagcccc
     2221 tcggcgtgct gtgctggaaa ccatcaaaac ttacctcacc ataactgagt ctcagttggt
     2281 gaatggcttc ctggaaaaag ctaccgagaa ggttcttgat cctgccagct ctgattttac
     2341 cagattgtct gtcctggacc tggttgtggc tttggctcct tactcagatg aagctgccat
     2401 cagtaagcta tactctacca tccggcccta ccttgagagc aaggtccatg gggtacagaa
     2461 gaaggcctac cgcgtgctgg aggaggtgtg tgccagttct cagggccctg cagcccgctt
     2521 cgtgcaaagc cacctggatg acctgaagaa gactctgctg gactcactgc agagcacatc
     2581 ctcgcctgct aaaaggcccc gtttgaagtg tctcatacat attgtgaaaa agctgtcagc
     2641 tgagcacgag gagttcatcg ctgccctcat cccagaggtg atcctgtgca ccaaggaggt
     2701 gtcagtgggt gcaaggaaga atgcgttcac cctgctggtg gagatgggcc acgctttcct
     2761 gcggtttgac tccagccagg aagaggctct gcagcgctac cttgtcctga tctatcctgg
     2821 ccttctggga gcggttacca cagtcagttg tagcattttg gctctgaccc acctcttgtt
     2881 tgagttcaaa gggctgatgg ggacaagcac agtggagcag ctcctagaga acgtgtgcct
     2941 gctgctggcc tctcgaaccc gtgatgtggt caagtctgca ctaggcttca tcaaggtggc
     3001 tgtggtggtc atggacgtgg tgcaccttgc taagcatgtg cagctagtgt tggaagccat
     3061 cgggaagttg tcagatgaca tgcgacggca cttccgcatg aagcttcgga acctgttcat
     3121 caagttcatt cgcaagtttg gattcgagtt ggtgaaggat ctgctgcctg cagaatacca
     3181 caaagtcctg gtaaacatca gaaaagcgga gacccgagcc aagaagcatc gtgccctgag
     3241 ccaggctgct atggaggagg aagaggagga agaggaagag aagcccgtcc agagcaaagg
     3301 tgacagcatt gaggagattt tggctgactc tgaggatgaa gatgaggaag aagaacgaag
     3361 ccagggcaag gagcagcgga agctggcacg acagaggagc agggcgtggc tgaaggaagg
     3421 tggtggcgat gagcccctca atttcttgga tcccaaggtg gcccaccgag tccttgccac
     3481 ccaacctggg cctgggcggg gcaagaaaaa ggaccatggc ttcaagttga gcgctgatgg
     3541 cagactgatc atccgagagg aggaagatgg agacaaggtg gaggaagaag atgtcactaa
     3601 aggggaagat gaagagatga ccgatgtgat ggaagatgcc agtgtcagaa gtaaaaagaa
     3661 gctcaagcgg cagagggagg atgaggagga tgaactggag atcccacctc ggtaccaagc
     3721 tggaggctct ggcatccatc gccctgtggc taagaaggct gcgcctggag ctgagtacaa
     3781 ggccaagaag gcaaagggtg atgtgaagag gaagggccgc ctggacccct atgcttacgt
     3841 cccactcaac agaaccaagc tcaaccgcag gaaaaaggtg aagctccagg gacagttcaa
     3901 aggtctggtg aaagctgccc aacggggatc ccaggtggga cacaaactcc acagaaagga
     3961 tcgtcggccc tgagtccctc tggaagtgga gctgttctct gctgcagtcc aaggccccta
     4021 tcgagctgcc atggtgttta gcaccagctc caggtgtgag ccttgctgaa cctggataga
     4081 gaatgactca ttgcaagcag gactcagttc caaaagagat gcctaagatt ttggaaactc
     4141 caaaatgtcc tttagaaacg ctgtcagcat ctaggagcgg aaatgtgatg ttgctacctc
     4201 tgagaaggcc ctacgaggtg ctctgctttc tgctgaatgt ggccacagaa cagagtgatg
     4261 actgtgggct gcatgtgtaa gatctgctgt aacccagcgt agaataaatg cacatgacca
     4321 tgcatcaacc ctgaaa
//
