LOCUS       NM_001012073            1836 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus ribosomal RNA processing 1 (Rrp1), mRNA.
ACCESSION   NM_001012073 XM_228077
VERSION     NM_001012073.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1836)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 1836)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 1836)
  AUTHORS   Hu YH, Warnatz HJ, Vanhecke D, Wagner F, Fiebitz A, Thamm S, Kahlem
            P, Lehrach H, Yaspo ML and Janitz M.
  TITLE     Cell array-based intracellular localization screening reveals novel
            functional features of human chromosome 21 proteins
  JOURNAL   BMC Genomics 7, 155 (2006)
   PUBMED   16780588
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC087152.1.
            
            On Feb 11, 2005 this sequence version replaced XM_228077.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC087152.1, SRR8487227.322348.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1836
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..1836
                     /gene="Rrp1"
                     /gene_synonym="Nnp1"
                     /note="ribosomal RNA processing 1"
                     /db_xref="GeneID:309674"
                     /db_xref="RGD:1307286"
     exon            1..174
                     /gene="Rrp1"
                     /gene_synonym="Nnp1"
                     /inference="alignment:Splign:2.1.0"
     CDS             42..1373
                     /gene="Rrp1"
                     /gene_synonym="Nnp1"
                     /note="novel nuclear protein 1; ribosomal RNA processing 1
                     homolog; ribosomal RNA processing protein 1 homolog
                     A-like"
                     /codon_start=1
                     /product="ribosomal RNA processing protein 1 homolog A"
                     /protein_id="NP_001012073.1"
                     /db_xref="GeneID:309674"
                     /db_xref="RGD:1307286"
                     /translation="MVPGVPLPPEIQLAQRLAGNEQVTRDRALRKLQKYIVARSQRAT
                     GGFTPEELLKVWKGLFYCMWMQDKPLQQEDLGRTIAQLVHAFQTTESQHLFLRAFWQT
                     MIREWVGIDRLRLDKFYMLMRMVLSESLKAVKTGGWEERQIEQLLQLLTTEILSPDSQ
                     APNGVKSHFLEIFLEELTKVGAAELTADQNLQFIKPFCQIAARTKDSLVLHKITQSIF
                     EAIVEQAPLAIEDLMNELDAQSGEGEGSDEDDGDDDSDEASEDEQDLQDTAPKNQPAG
                     SVSRADLEVDEEAWDDEEDTGPVLQFDYEAVANKLFKLASRQSTPSQNRKRLYKVIQK
                     LRDLAGGIFPEDDVPEKAYKKLLEGRRKQKKKKKRLPTLQPQNKEGGSETEASSADPS
                     RGRKRKRSRKTDEKAGQRGPPGKRRKPGARAKGPRVQQPKRKKKGSSQSAK"
     exon            175..257
                     /gene="Rrp1"
                     /gene_synonym="Nnp1"
                     /inference="alignment:Splign:2.1.0"
     exon            258..315
                     /gene="Rrp1"
                     /gene_synonym="Nnp1"
                     /inference="alignment:Splign:2.1.0"
     exon            316..401
                     /gene="Rrp1"
                     /gene_synonym="Nnp1"
                     /inference="alignment:Splign:2.1.0"
     exon            402..463
                     /gene="Rrp1"
                     /gene_synonym="Nnp1"
                     /inference="alignment:Splign:2.1.0"
     exon            464..593
                     /gene="Rrp1"
                     /gene_synonym="Nnp1"
                     /inference="alignment:Splign:2.1.0"
     exon            594..658
                     /gene="Rrp1"
                     /gene_synonym="Nnp1"
                     /inference="alignment:Splign:2.1.0"
     exon            659..867
                     /gene="Rrp1"
                     /gene_synonym="Nnp1"
                     /inference="alignment:Splign:2.1.0"
     exon            868..944
                     /gene="Rrp1"
                     /gene_synonym="Nnp1"
                     /inference="alignment:Splign:2.1.0"
     exon            945..1042
                     /gene="Rrp1"
                     /gene_synonym="Nnp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1043..1062
                     /gene="Rrp1"
                     /gene_synonym="Nnp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1063..1179
                     /gene="Rrp1"
                     /gene_synonym="Nnp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1180..1791
                     /gene="Rrp1"
                     /gene_synonym="Nnp1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcgccccag cggagtgcgt ggtctcaggg tcctgctcac catggttccc ggagtgccgc
       61 tcccgccgga gatccagctg gcgcagcgtc tggcgggcaa tgagcaggtg acgcgggacc
      121 gcgcgttacg gaagctgcag aagtacatcg tggccaggag tcagcgagcg acaggtggtt
      181 ttactccaga ggagcttcta aaagtatgga aaggactgtt ttattgcatg tggatgcagg
      241 acaagcccct ccagcaggaa gacctaggca ggaccattgc ccagctcgtc catgcttttc
      301 agaccacaga gtcacagcac ctgttcctgc gggccttctg gcagaccatg atccgagagt
      361 gggtgggcat cgacagactg cgtctggata agttctacat gctcatgagg atggtcctga
      421 gtgagtcgct gaaggctgtg aaaaccggag gctgggaaga gagacagatt gagcagctgc
      481 tgcagctgct gaccaccgag atactgagcc ctgacagcca ggcccccaat ggggtgaaga
      541 gccacttcct agagatcttt ctggaggaac tgaccaaagt gggcgctgca gagctcaccg
      601 cagaccagaa tctgcagttc atcaagccct tctgccagat agcagcccgc actaaggact
      661 ccctggtttt gcataagatc actcagagca tctttgaggc gatcgtggaa caggctccct
      721 tggccataga agacctcatg aatgaactag atgcacagag cggagagggg gaagggtcag
      781 acgaggacga tggtgatgat gacagtgacg aggcctcaga ggacgagcag gatctgcaag
      841 acacagctcc caagaatcag cctgcaggct ctgtaagtag ggctgacctt gaggtggacg
      901 aggaggcgtg ggatgacgag gaagacactg gccctgtcct ccagtttgac tacgaggcag
      961 tggctaacaa actgttcaag ctggccagta gacagagcac cccctctcag aaccggaagc
     1021 gcctctacaa agtgatccaa aagctgcggg acctggctgg aggcattttc cctgaggatg
     1081 atgtccctga aaaagcctat aagaagctgc tagaagggag gcggaaacag aagaagaaaa
     1141 agaagcgctt gcccacactg cagcctcaga ataaggaagg ggggagcgag acagaagcct
     1201 caagtgcaga cccaagccgg ggaaggaaga ggaagaggag caggaagact gatgagaagg
     1261 ctggccaaag agggcctcct gggaagagga ggaagcccgg ggctagagcc aaggggccta
     1321 gggtccagca accaaagagg aagaagaaag gatcatcaca gagtgcgaag tgaggtgcac
     1381 agcccaggcc ggctggcctc cttactggca tgaggtgaat ggggccaggc tctctgcgca
     1441 tgctcctgca gcctctggat gccaaggctc tgagcgctct ataggggagg aggatgaaag
     1501 aggagacccc tggttagtcc tggccttcag gaatgctcct gcctcagcta tggcctgcat
     1561 atcagaaatt cattccgaac actcaaaatt ttactcgtac atagctgtgg ctgtgcctga
     1621 tcctgaccag agaggccaga agatctggag actgagtcca gcctgggtcg tagggcaaaa
     1681 ccctgtctcc gcttccctcc cctacagtaa ggaaaacaaa actgagtaac tgtgtgacca
     1741 ccgtcaactc catcctgggc tgcccaccaa ataaactgcg ggaccttaca aaaaaaaaaa
     1801 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//
