LOCUS       NM_001415060            1439 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus retinal pigment epithelium derived rhodopsin
            homolog (Rrh), transcript variant 1, mRNA.
ACCESSION   NM_001415060 XM_006232003
VERSION     NM_001415060.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1439)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Dec 20, 2022 this sequence version replaced XM_006232003.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760393
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-160               JAXUCZ010000002.1  221048468-221048627 c
            161-351             JAXUCZ010000002.1  221043031-221043221 c
            352-451             JAXUCZ010000002.1  221041337-221041436 c
            452-605             JAXUCZ010000002.1  221040696-221040849 c
            606-774             JAXUCZ010000002.1  221039701-221039869 c
            775-953             JAXUCZ010000002.1  221038344-221038522 c
            954-1439            JAXUCZ010000002.1  221036436-221036921 c
FEATURES             Location/Qualifiers
     source          1..1439
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q43"
     gene            1..1439
                     /gene="Rrh"
                     /note="retinal pigment epithelium derived rhodopsin
                     homolog"
                     /db_xref="GeneID:310869"
                     /db_xref="RGD:1308948"
     exon            1..160
                     /gene="Rrh"
                     /inference="alignment:Splign:2.1.0"
     CDS             55..1068
                     /gene="Rrh"
                     /note="isoform 1 is encoded by transcript variant 1;
                     visual pigment-like receptor peropsin"
                     /codon_start=1
                     /product="visual pigment-like receptor peropsin isoform 1"
                     /protein_id="NP_001401989.1"
                     /db_xref="GeneID:310869"
                     /db_xref="RGD:1308948"
                     /translation="MLRDALDFNSSGSGSEGSVFTKSEHSIIAAYLIVAGIISILSNI
                     IVLGIFIKYKELRTPTNAVIINLAFTDIGVSSIGYPMSAASDLHGSWKFGHAGCQVYA
                     GLNIFFGMVSIGLLTVVALDRYLTISCPDVGRRMTGNTYLSMVLGAWINGLFWALMPI
                     VGWASYAPDPTGATCTINWRKNDTSFVSYTMMVIVVNFIVPLTVMFYCYYHVSQSMRL
                     SAASNCTTHLNRDWAHQADVTKMSVMMILMFLLAWSPYSVVCLWACFGNPKKIPPSLA
                     IIAPLFAKSSTFYNPCIYVAANKKFRKAMFAMLKCQPHQAMPEPSTLAMGVPHSPLAP
                     ARI"
     exon            161..351
                     /gene="Rrh"
                     /inference="alignment:Splign:2.1.0"
     exon            352..451
                     /gene="Rrh"
                     /inference="alignment:Splign:2.1.0"
     exon            452..605
                     /gene="Rrh"
                     /inference="alignment:Splign:2.1.0"
     exon            606..774
                     /gene="Rrh"
                     /inference="alignment:Splign:2.1.0"
     exon            775..953
                     /gene="Rrh"
                     /inference="alignment:Splign:2.1.0"
     exon            954..1439
                     /gene="Rrh"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaacttttct gatcaccatt gctgaagggc tactccaaag gtggtctctc caaaatgctg
       61 agggacgctt tggattttaa cagctcaggc tctgggagtg aaggttctgt ctttacaaag
      121 agtgagcaca gcatcattgc agcttacctg attgtggcag gtatcataag cattctcagc
      181 aacataatag ttctgggcat cttcattaag tacaaggaac tgcggacacc cacgaatgca
      241 gtgattatta acctggcttt cactgatata ggggtcagta gcattggcta tcccatgtct
      301 gctgcttccg atctgcatgg aagttggaaa tttggacatg cgggctgtca ggtttatgca
      361 ggactgaata tcttctttgg aatggtgagc attggcttac tcacagtggt agctctggat
      421 cggtacctga ccatcagctg tcctgatgta ggaagaagaa tgaccggcaa cacttacctc
      481 agcatggtcc tgggcgcctg gatcaatggc ctattttggg ctttgatgcc cattgtgggg
      541 tgggctagtt atgccccgga tcctactggg gctacatgta ccataaactg gcggaaaaat
      601 gatacctctt ttgtgtctta caccatgatg gttattgtgg tgaacttcat cgtgcccttg
      661 acagtgatgt tttactgtta ctaccacgtc agtcagtcca tgagactttc cgctgctagt
      721 aactgcacta cgcacctcaa cagagactgg gcacaccagg ccgatgtaac caagatgtct
      781 gtgatgatga tactgatgtt tttgctggca tggtccccgt attctgttgt gtgcctatgg
      841 gcttgttttg gaaacccgaa aaagattcct ccttcattgg ccatcatagc tccactgttt
      901 gcaaaatcct ccacgttcta caacccttgt atttatgtgg ctgccaataa gaagtttcgg
      961 aaggccatgt ttgccatgtt gaagtgccaa cctcaccagg caatgcctga gccaagcact
     1021 ctagcaatgg gtgtgcctca cagcccattg gctcctgcaa ggatctgaaa tgcaaggaaa
     1081 gaatatacca ccaaacattc gatgcgttta ttttttggca atacgctgat tttgttttaa
     1141 atgtgaatcc atttagacca agcgctgaca tagactattg ccttgttgga ctgcaggctc
     1201 ctccgacaca gccaccccaa cttgagcagc actggctgca gagcctcact gtgtcctcag
     1261 gataactaag tagctacacg tgcttcgttg gatccaggca cacgaactac agtctcgctc
     1321 tccttaaagg gcgcacatca tagtacatag atgacctgta acttgactaa ggtttccact
     1381 agccaagaaa cagctgtcag aacactagaa tattttaata aaattataat cctcaataa
//
