LOCUS       NM_001135845            3169 bp    mRNA    linear   ROD 12-JUN-2023
DEFINITION  Rattus norvegicus RNA pseudouridine synthase domain containing 2
            (Rpusd2), mRNA.
ACCESSION   NM_001135845 XM_001080784 XM_230464
VERSION     NM_001135845.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3169)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from CH473949.1.
            
            On or before Oct 17, 2008 this sequence version replaced
            XM_001080784.1, XM_230464.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3169
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q35"
     gene            1..3169
                     /gene="Rpusd2"
                     /gene_synonym="RGD1306147"
                     /note="RNA pseudouridine synthase domain containing 2"
                     /db_xref="GeneID:311326"
                     /db_xref="RGD:1306147"
     exon            1..681
                     /gene="Rpusd2"
                     /gene_synonym="RGD1306147"
                     /inference="alignment:Splign:2.1.0"
     CDS             37..1698
                     /gene="Rpusd2"
                     /gene_synonym="RGD1306147"
                     /note="RNA pseudouridylate synthase domain-containing
                     protein 2; CG6187-like; RNA pseudouridylate synthase
                     domain containing 2; RNA pseudouridylate synthase
                     domain-containing protein 2-like"
                     /codon_start=1
                     /product="pseudouridylate synthase RPUSD2"
                     /protein_id="NP_001129317.1"
                     /db_xref="GeneID:311326"
                     /db_xref="RGD:1306147"
                     /translation="MWRSVPGCLRYIVQWQVALWSHSFVRTWGSCGKAMTEALSAQAE
                     AADGLKALIEQNGDTGSDTRGEPHLELLEPATVGKQVPESGEQAQGGEEQLPGNGEQA
                     PTPVADSGKRKKRRGATGERVVPPPKKRRTGVSFSDEHFAETTYYFEGGLRKVRPYYF
                     DFQTYCKGRWVGRSLLHVFSTEFRSQPLAYYEAAVRAGRLHLNEEPVQDLNIVLKDND
                     FLRNTVHRHEPPVTAEPIRLLAENDDVVVIDKPSSIPVHPCGRFRHNTVIFILGKEHQ
                     LKELHPLHRLDRLTSGVLMFAKTAAVSEKIHEQVRDRQLEKEYVCRVAGEFPDKEVIC
                     KEPILVVSYKVGVCRVDPQGKPCETVFQRLSYNGRSSVVQCRPLTGRTHQIRVHLQFL
                     GHPILNDPIYNSTAWGPSRGQGGHIPKTDEELLRDLVAEHQAKESLSMLDLCEGDLAP
                     GLIDSTAPSSELGKDSLEGLATAAQKIDGMVDEASQHPDTPGKAAKADVSQQTDPLCA
                     ECRVLRQDPLPQDLVMFLHALRYKGPDFEYVSPIPAWAQADWQED"
     exon            682..978
                     /gene="Rpusd2"
                     /gene_synonym="RGD1306147"
                     /inference="alignment:Splign:2.1.0"
     exon            979..3169
                     /gene="Rpusd2"
                     /gene_synonym="RGD1306147"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcatatcgcg accccgaagc ggcttgccat gctgttatgt ggcgaagtgt cccgggctgc
       61 ctacggtata ttgtgcagtg gcaggtggcg ctctggtccc acagctttgt ccggacttgg
      121 ggtagctgtg ggaaggcgat gactgaggca ctctctgcgc aagccgaggc agcggacgga
      181 ctgaaggctt tgattgagca aaatggagat actggtagcg acaccagggg agagccgcac
      241 ctagagctcc tagagccagc gacggtaggg aagcaggtcc cggagagcgg ggagcaggcc
      301 cagggaggcg aagagcagct cccggggaac ggagagcagg ccccaactcc agtcgccgac
      361 tcaggcaaga ggaaaaagcg gcggggcgcc actggggaac gggtcgtgcc gcccccgaag
      421 aaacggcgga ctggggtgag ctttagcgac gagcactttg cagagaccac ctactacttc
      481 gagggcggct tgcgcaaggt gcggccctat tactttgact tccagaccta ctgtaaaggt
      541 cgctgggtgg gtcgcagctt gttgcacgtc ttcagcaccg agttccgatc ccagccactg
      601 gcttactacg aggccgctgt ccgggcagga cgcctgcatc tcaacgagga accagtccag
      661 gacctcaaca tcgtcctcaa ggacaatgat ttcttgcgga acacagtgca cagacatgag
      721 ccaccagtca cagcagagcc tattcgcctg ctagctgaga acgatgatgt ggttgttata
      781 gacaagccgt cctccattcc tgtccacccc tgtggccgct tccgacacaa cacggtcatc
      841 ttcatcctag gcaaggagca ccaactaaag gaactacacc cgttgcatcg gctcgatcgc
      901 ctcacctcag gagtgctcat gtttgccaag acagctgcgg tgtctgagaa gatccatgaa
      961 caagttcggg atcggcagct ggagaaggaa tatgtatgcc gggttgcagg ggagttccct
     1021 gacaaggagg taatttgtaa ggaacccatc ttagtggtat cttacaaggt aggagtgtgc
     1081 cgtgtggatc cccagggcaa accctgtgag actgtgttcc agaggctgag ctacaatggc
     1141 cgctccagtg tggtacagtg ccgaccactt acaggtcgca ctcaccagat ccgagtccac
     1201 ctccagttcc tgggccaccc cattctcaat gaccccatct acaattcaac tgcctggggt
     1261 ccttctcgag gccagggtgg ccacattcca aagacggacg aggaactgct ccgagacctg
     1321 gttgcagaac atcaggccaa agaaagcctg agtatgctag atctctgtga gggtgacctg
     1381 gctccagggc tcatagactc tacagctccc tcttcagagt tgggcaaaga cagcctggaa
     1441 gggttggcta cggcagccca gaagatagat gggatggtgg acgaagcctc tcagcatccg
     1501 gacacaccag ggaaggcagc taaggcagac gtgagtcaac aaacagatcc gctctgtgcc
     1561 gagtgccggg tgttaagaca ggatcccttg ccccaggacc ttgtaatgtt cctgcatgcc
     1621 ctccgctata aagggccaga ctttgagtac gtctcaccca tcccagcctg ggcacaggct
     1681 gactggcaag aagactgagg gatgtggcca ttggaagaat ggcttttggg ttggaacaag
     1741 gatgggcctt gaggcaggga ctgctcccat tggttggaac tcagggtttg ggaaagagcg
     1801 aggttcttcc acagtaagga acctgcttgt acttgctacc tccttccttc tggcttgttt
     1861 ggggctttca gatctgtaca tataccattt tttatctaac acctttcatg tccattttta
     1921 ctggtttctt acaatccctc cactctcccc cagtgcttag gatagggtgt aggtccattg
     1981 tcaaggaagg caagtgctct acagccccta agtatttttg agtttctgga gctcaggccg
     2041 accttgaacc ctgactccta ctctgcctcc agagtgggaa tacaggtgtg aagccccatg
     2101 ccttgccttt ttttttttta aattgagata aaattcacat agcataaaat taactgcttt
     2161 aagataaaca ctggattggc atttactgtg ttcacaaact tgagcaacct tatctcaaga
     2221 tttcaaaact catctctcat ccctaaaggg aatctgtacc tgttaggtac attcttccct
     2281 ttatctctct cagctcctgg tgaacagttt attctttatt ccacagaaat ggactcagac
     2341 aatctgtgtc tttttctttt ttcttttttt ttttgtttgt tttttgtttg ttgttgttgt
     2401 tgtatgtttg ttttctgaga cagggtttct cagtgtaaca ctggctggtc ttgaatgcac
     2461 agagatccac ctgcctctgc ctcctaagtg ctgggattca aggggcaatg ccaccacctc
     2521 ccggctaccc aacacatcct tttctgtttg ttctactgat tgtgtctctc ctggtgtgtg
     2581 tggagtaatc tctcatagtg gagtttactc tttctgttgt gttgtttatt atatattctg
     2641 gacatgaggc ctccctcaac aacaaaagaa ttagcagccc aattttaaaa tgtccaaaag
     2701 gattctggtt aacacacaca cacacacaca cacacacaca cacacacaca cacacacaca
     2761 cacgtcgaag ctggagggca attctacagt ctggttaaga gcactctttg ctctttgagt
     2821 ggctcacaac tacctgatat cccagcatca ggggatcctt cccctcttct ggcctctgcc
     2881 agggctatat agtaaggtat gtttcaaaat agcaacaaag acagaagcag tgcaacttaa
     2941 caaaactgac atgttttaga atggcatatt ccctggagtc aggactgtta accactatgg
     3001 cacttactca gttcaaagcc ctgccttcca caggtaagca ttgtgtatat catggctgtc
     3061 ttttcactcc aaattaactc ttctctcatg tgacgagtat tgttattttc aaaaccacaa
     3121 tttatcagcc attagccaca tcaaaataat tggataatgt ctttctatt
//
