LOCUS       NM_001105774            1747 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus RNA pseudouridine synthase domain containing 1
            (Rpusd1), mRNA.
ACCESSION   NM_001105774 XM_001060807 XM_213253
VERSION     NM_001105774.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1747)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1747)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473948.1.
            
            On or before Oct 3, 2007 this sequence version replaced
            XM_213253.4, XM_001060807.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ213277.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1747
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..1747
                     /gene="Rpusd1"
                     /gene_synonym="RGD1304934"
                     /note="RNA pseudouridine synthase domain containing 1"
                     /db_xref="GeneID:287148"
                     /db_xref="RGD:1304934"
     exon            1..130
                     /gene="Rpusd1"
                     /gene_synonym="RGD1304934"
                     /inference="alignment:Splign:2.1.0"
     exon            131..319
                     /gene="Rpusd1"
                     /gene_synonym="RGD1304934"
                     /inference="alignment:Splign:2.1.0"
     CDS             138..1058
                     /gene="Rpusd1"
                     /gene_synonym="RGD1304934"
                     /note="RNA pseudouridylate synthase domain containing 1"
                     /codon_start=1
                     /product="RNA pseudouridylate synthase domain-containing
                     protein 1"
                     /protein_id="NP_001099244.1"
                     /db_xref="GeneID:287148"
                     /db_xref="RGD:1304934"
                     /translation="MEPGSMENLSIVYQSNDFLVVNKHWDLRIDSKTWRETLTLQKQL
                     RHHFPELADPDTCYGFRFCHQLDFSTSGALCVALNKAAAGSAYKCFKERRVTKAYLAL
                     VRGHVQESQVTINYAIGRNSTEGRTHTMCIEGTHGCENPKPSLTELLVLEHGLYSGDP
                     VSKVLLKPLTGRTHQLRVHCSALGHPIVGDLTYGQADDQEDQPFRMMLHAFYLRIPTR
                     AECVEACTPDPFLPALDACWSPSTCIQPLEQLIQALRTDPDPDPMARGPRPCSPSTPQ
                     PRPGRPPPETEAQRASCLQWLSEWTLEPDN"
     exon            320..443
                     /gene="Rpusd1"
                     /gene_synonym="RGD1304934"
                     /inference="alignment:Splign:2.1.0"
     exon            444..546
                     /gene="Rpusd1"
                     /gene_synonym="RGD1304934"
                     /inference="alignment:Splign:2.1.0"
     exon            547..648
                     /gene="Rpusd1"
                     /gene_synonym="RGD1304934"
                     /inference="alignment:Splign:2.1.0"
     exon            649..1747
                     /gene="Rpusd1"
                     /gene_synonym="RGD1304934"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccaggtgga atgggcaggg tgaaggcaga gctgcgcggc agccaggcca agacctggtt
       61 ccttgtatag gaaagctggg ttggatgcag ggctgagacg tgacatcctg gtcctttggc
      121 cctgttgcag ccccaccatg gagcctggca gcatggaaaa tctgtccatc gtgtaccaga
      181 gcaacgactt cctggtggtg aacaagcact gggacctgcg cattgatagc aagacctggc
      241 gtgagaccct gaccctacag aagcaactcc gacaccactt cccagagctg gctgaccctg
      301 acacctgcta tgggttcagg ttctgccacc aactggactt ctccaccagc ggggcgctgt
      361 gcgtggccct gaataaagca gctgcgggca gcgcttataa gtgcttcaag gagcgacgag
      421 ttaccaaagc ctacctggca ctggtccgag gccatgtcca ggaaagccaa gtgacgatca
      481 actatgccat tggcaggaac agcacagagg ggcggaccca caccatgtgc attgagggca
      541 ctcatggttg tgagaaccct aagccaagtc tcacagagct gctggtcctg gaacatgggt
      601 tatattctgg tgaccctgtg tccaaagtgc tgctgaagcc acttacaggc cggacacacc
      661 agcttcgagt acactgcagc gctctcggcc accctatcgt gggcgacctg acttacggac
      721 aggctgacga ccaggaggac caaccgttcc gtatgatgct gcacgccttc tacctgcgca
      781 tccccacacg ggccgagtgc gtggaggcct gtacgcctga ccccttcctg cctgcccttg
      841 atgcctgctg gagtcccagt acctgcattc aaccccttga acagctcatc caggccctac
      901 ggactgaccc tgaccctgac ccgatggcca gagggccaag gccctgcagc ccctccaccc
      961 cacagcccag gccaggtcgg ccgcctcctg aaactgaggc acagagagcg tcgtgcctgc
     1021 agtggttatc agagtggacg ctagagccgg acaactaagg gcctctgagc tttgggggtc
     1081 aagagctgct agactcagca gctaggaagc catgattgct agaggacagg gtactcaggc
     1141 tgtaggagag atgtccagta ggtaagtctt gccctcagca ttcctccagg gggagctaag
     1201 gccgttcctt ctggaatagc tttctgcctc cttagcttta ccccaggctg gcccaagccc
     1261 ctagccagga agggcaaagc caggagcaag gatcctccag ggcttcacag cgcctgggaa
     1321 gggccatcct tccattagcc cacctggact tgggtcccct gcagccccca gcctgtctct
     1381 tgctgcctgc cactgtcatg tgcctttgcc ttcctgaact ctgccagggc ctcacctcct
     1441 ctgcctgcat ctagcgcttg gccccaatgc atgggagtgc attggagcgt ctacagaggc
     1501 gtcctccaca cgcgcccgtc cctctaagcc tgccctggat gctgcttctg ctctatgggc
     1561 tcctagttgg agcattgacc atgtcaccac ctgcctggct tccacatagc catagagtat
     1621 cagcgtcagc ctttgggtcc tctcctggga gccttctggg cctcacctga ccaccacaac
     1681 acagccacag caccctggct gcagctaggg tctaggatta agaataaatg ttcagtgatc
     1741 aatctcg
//
