LOCUS       XM_227371               3582 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus repetin (Rptn), mRNA.
ACCESSION   XM_227371
VERSION     XM_227371.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_227371.5.
            
            On Jan 21, 2021 this sequence version replaced XM_227371.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3582
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3582
                     /gene="Rptn"
                     /note="repetin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 Proteins, and 38%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:295190"
                     /db_xref="RGD:1311687"
     CDS             86..3436
                     /gene="Rptn"
                     /codon_start=1
                     /product="repetin"
                     /protein_id="XP_227371.1"
                     /db_xref="GeneID:295190"
                     /db_xref="RGD:1311687"
                     /translation="MPQLLNSILNVNKVFQNYAEHHGAGASLSKKELKQLLLAEFGDI
                     LRRPNDPETVETILEHLDRDRNGYVDFHEYLLLVFQLVQACHHKLDSKLHGTGTSFQK
                     EHGQEGTQSHKFSENTSRQHKQRYQGQRQNSHHSQSEGRQNVQHDQSQRQNKDSEKHD
                     TDPHYGQSETFHGDSHYGHSEKSDTDYSSDQSESDGQSSSSSQRLSYKSSHDQPKGQG
                     YIFALYQSENPAQASHYGQSKTFGEQSNRGQSGRFRKESYSSQTSQESDSYEQYGNQH
                     QKSGHSQTERQGQKSQYGQTNKKGHSSYHEQTDRQDKSFHYGQKGRQDQGFQHGQKDK
                     QDQSSHQGQKGREDQSSHQSQKGRRGQSPHQGQKGRQGQSPHQGQKGRQGQSPHQGQK
                     GREDQSFHQGQKGREDQSFQQGQKGRGDQSSHQGQKGRGDQSSHQGQKGRQDRSPHQG
                     QKGREDQSSHQGQKGRQNQSSHHGQIEDQDQSSRWHQSDRQDHGFHYGQTGGQGQSSH
                     HGQTEDQDQSSHWHQTDRQDRGFHYGQTGREGQSSHQGQADRQGQISHQGQKGRGDQS
                     SHQGQKGRGDQSSHQGQKGREDQSFHQGQKGRGDQSSHQGQKGKDQSFHQGQKGREDQ
                     SSHQGQKGRGDQSFHQGQKGREDQSFHQGQKGREDQSSHQGQKGRGDQSFHQGQKGRE
                     DQSSHQGQKGRQDQSSHQGQTGGHSQSSHQGWTREESQSSHQGQTGGQSHSSPQGWTR
                     EESQSSHQGQIGRQGQSSHQGQTDNQDQSSRWHQTDRRGQSFQHGQTGEQSQSSHQGQ
                     TGSQGQSSQWHQSDRQGQSFHHGQRDREGQSSHQGQTDRQSQSSHCGQSDTGKTEFQG
                     QNKHFQGTDRTRRDSYVEQSGRSGKLSQQNSREEGNQTQRQRSQDRREQQIQHQAWKP
                     EEDNQHKLLAQVHQEPYSHEEYDSQSQSSEQGHWGEEEHHQDWDRHNVEDQESLYEMQ
                     NWQTHEEEQNHQRSDRQTHADEQNKQRQHRQTHEENHDHQHGRQDEEEQNHKRRGHHQ
                     QWDRHTHEENEKYQGGQGQFRTFPNKEKFHRNEEDQYEGSQGRHFHPTHSGERSQRRE
                     KSGNHATKTANTSSPFYDYVQEQAAYHY"
ORIGIN      
        1 ttcttcttct cctcttcttc ttcttcttct tcctcctctt attcctcctc ctcctccttc
       61 ttaagattca ccagggtttg tcaagatgcc tcaacttctg aacagcatac tcaacgtgaa
      121 caaggtgttc cagaactatg ctgaacatca tggggcaggc gcttcactga gcaagaagga
      181 gttgaagcag ctgctcctcg ctgagtttgg agacatcctt cggagaccaa atgatccaga
      241 gactgtggaa accattctgg aacacttgga ccgagataga aatggatatg ttgattttca
      301 tgaatacctc ttgctggtgt tccaattggt ccaagcctgc catcataagc tagatagtaa
      361 gttgcatgga actggaacct ccttccagaa ggaacatggt caggaaggaa cacagagtca
      421 taaattttca gaaaacacaa gcagacaaca taagcagagg tatcaaggac aacgccagaa
      481 ctctcaccac agtcagtctg agggacgtca aaatgtccaa catgatcagt cccagagaca
      541 aaataaggac tctgagaaac atgatacaga tcctcactat ggtcagtcag agacattcca
      601 tggggactcc cactatggtc attctgagaa atcagacaca gattatagct cagatcagtc
      661 tgagtcagat ggtcaatctt caagctctag tcaaagactg agctataaat ctagtcatga
      721 ccagcccaaa ggccaaggat atatctttgc cttatatcag tctgagaacc ctgcacaggc
      781 ttctcattat ggccagtcta aaacatttgg agaacaaagt aaccgtggcc agtctggaag
      841 attcagaaaa gagtcttatt ctagtcaaac cagtcaagaa tctgactctt atgaacaata
      901 tggaaatcaa catcagaaat caggccacag tcagacagag agacaaggcc agaagtctca
      961 gtatggccag acaaacaaaa aaggacatag ttcataccat gagcagacag atagacaaga
     1021 caagagtttc cattatggcc agaaaggaag acaagaccag ggtttccaac atggtcagaa
     1081 agacaaacaa gatcagagtt ctcaccaagg tcagaaaggc agagaagacc agagttctca
     1141 ccagagtcag aaaggcaggc gaggccagag tcctcaccag ggtcagaaag gcagacaagg
     1201 ccagagtcct caccagggtc agaaaggcag acaaggccag agtcctcacc agggtcagaa
     1261 aggcagagaa gaccagagtt tccaccaggg tcagaaaggc agagaagacc agagtttcca
     1321 gcagggtcag aaaggcagag gagaccagag ttcccaccag ggtcagaaag gcagaggaga
     1381 ccagagttct caccagggtc agaaaggcag acaagaccgg agtccccacc agggtcagaa
     1441 aggcagagag gaccagagtt ctcaccaggg tcagaaaggc agacaaaacc agagttctca
     1501 tcatggtcag atagaggatc aagaccagag ttcacgttgg catcagtcag acagacaaga
     1561 ccatggtttt cattatggtc agacaggtgg acaaggccag agttctcatc atggtcagac
     1621 agaggatcaa gaccagagtt cacattggca tcagacagac agacaagacc ggggttttca
     1681 ttatggtcag acaggcagag aaggccagag ttctcatcag ggtcaggcag acagacaagg
     1741 ccagatttca caccagggtc agaaaggcag aggagaccag agttcccacc agggacagaa
     1801 aggcagagga gaccagagtt cccaccaggg tcagaaaggc agagaagacc agagtttcca
     1861 ccagggtcag aaaggcagag gagaccagag ttcccaccag ggtcagaaag gcaaagacca
     1921 gagtttccac cagggtcaga aaggcagaga agaccagagt tctcaccagg gtcagaaagg
     1981 cagaggagac cagagtttcc accagggtca gaaaggcaga gaagaccaga gtttccacca
     2041 gggtcagaaa ggcagagaag accagagttc tcaccagggt cagaaaggca gaggagacca
     2101 gagtttccac cagggtcaga aaggcagaga agaccagagt tcccaccagg gtcagaaagg
     2161 cagacaagac cagagttcac accagggtca aacaggggga cacagccaga gctctcacca
     2221 gggatggaca agggaagaaa gccagagttc acaccagggt caaacagggg gacaaagcca
     2281 cagctctccc cagggatgga ccagggaaga aagccagagt tcacaccagg gtcaaatagg
     2341 cagacaaggc cagagctctc atcagggtca gacagataat caagaccaga gttcacgttg
     2401 gcatcagaca gacagaagag gccagagctt tcaacatggt cagacgggtg aacaaagcca
     2461 gagttcacac cagggtcaaa caggcagtca aggccagagt tcacaatggc atcagtcaga
     2521 cagacaaggc cagagttttc atcatggtca gagagacaga gaaggccaga gttctcacca
     2581 gggtcagaca gacagacaaa gccagagttc tcactgtggt cagtcagaca ctggaaaaac
     2641 tgaatttcaa gggcaaaaca agcactttca agggactgat agaacaagaa gagactcata
     2701 tgttgaacaa tctggaaggt caggaaaact aagtcaacag aattcaagag aagaagggaa
     2761 tcaaacccag agacagagat cccaggatag aagggagcag caaatccagc accaggcatg
     2821 gaagcctgaa gaggataatc aacacaaact cttagctcag gtacatcaag agccatactc
     2881 tcatgaagag tatgactcac aatcacagag cagcgagcag ggccactggg gagaggaaga
     2941 gcatcatcaa gattgggata gacacaatgt tgaggatcag gaaagtctat atgagatgca
     3001 gaactggcaa actcatgaag aggaacagaa ccatcaaaga agtgataggc aaacccatgc
     3061 agatgagcag aacaagcaaa gacaacacag gcaaactcat gaagaaaatc atgatcacca
     3121 acatggtaga caggatgaag aggagcaaaa tcacaagaga cgaggccatc atcaacaatg
     3181 ggatagacat acccatgaag aaaatgagaa gtatcaagga ggccaaggcc aattcagaac
     3241 cttccccaac aaagaaaaat tccacaggaa tgaagaggac cagtatgaag ggtcccaggg
     3301 aagacatttc catccaacac atagtggtga aaggtcccaa agaagagaaa aatctggaaa
     3361 ccatgctacc aaaacagcta acacctccag ccctttctat gactatgtcc aagagcaggc
     3421 agcatatcat tattaggcct tgtgagcagc aggctaaagt aagtcgaagc taaagaagaa
     3481 acctacatgc caatttattg ttacttctgt ttaaaaggtt gagattatat ttcatccttc
     3541 tctctttttg tctctctata agaatgcttt tgaagacttg ta
//
