LOCUS       NM_001313935             711 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribosomal protein S9 (Rps9), transcript variant
            1, mRNA.
ACCESSION   NM_001313935 NM_031108 XM_008758836
VERSION     NM_001313935.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   2  (bases 1 to 711)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   3  (bases 1 to 711)
  AUTHORS   Kuo,J.C., Han,X., Hsiao,C.T., Yates,J.R. 3rd and Waterman,C.M.
  TITLE     Analysis of the myosin-II-responsive focal adhesion proteome
            reveals a role for beta-Pix in negative regulation of focal
            adhesion maturation
  JOURNAL   Nat Cell Biol 13 (4), 383-393 (2011)
   PUBMED   21423176
REFERENCE   4  (bases 1 to 711)
  AUTHORS   Buschow,S.I., van Balkom,B.W., Aalberts,M., Heck,A.J., Wauben,M.
            and Stoorvogel,W.
  TITLE     MHC class II-associated proteins in B-cell exosomes and potential
            functional implications for exosome biogenesis
  JOURNAL   Immunol Cell Biol 88 (8), 851-856 (2010)
   PUBMED   20458337
REFERENCE   5  (bases 1 to 711)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   6  (bases 1 to 711)
  AUTHORS   Lutsch,G., Bielka,H., Enzmann,G. and Noll,F.
  TITLE     Electron microscopic investigations on the location of rat liver
            ribosomal proteins S3a, S5, S6, S7 and S9 by means of antibody
            labeling
  JOURNAL   Biomed Biochim Acta 42 (6), 705-723 (1983)
   PUBMED   6196023
REFERENCE   7  (bases 1 to 711)
  AUTHORS   Todokoro,K., Ulbrich,N., Chan,Y.L. and Wool,I.G.
  TITLE     Characterization of the binding of rat liver ribosomal proteins L6,
            L8, L19, S9, and S13 to 5.8 S ribosomal ribonucleic acid
  JOURNAL   J Biol Chem 256 (14), 7207-7212 (1981)
   PUBMED   7251593
REFERENCE   8  (bases 1 to 711)
  AUTHORS   Gressner,A.M.
  TITLE     Two-dimensional electrophoretic analysis of ribosomal proteins from
            chronically injured liver
  JOURNAL   J Clin Chem Clin Biochem 17 (8), 541-545 (1979)
   PUBMED   501300
REFERENCE   9  (bases 1 to 711)
  AUTHORS   Collatz,E., Ulbrich,N., Tsurugi,K., Lightfoot,H.N., MacKinlay,W.,
            Lin,A. and Wool,I.G.
  TITLE     Isolation of eukaryotic ribosomal proteins. Purification and
            characterization of the 40 S ribosomal subunit proteins Sa, Sc,
            S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18,
            S19, S20, S21, S26, S27', and S29
  JOURNAL   J Biol Chem 252 (24), 9071-9080 (1977)
   PUBMED   925037
REFERENCE   10 (bases 1 to 711)
  AUTHORS   Collatz,E., Wool,I.G., Lin,A. and Stoffler,G.
  TITLE     The isolation of eukaryotic ribosomal proteins. The purification
            and characterization of the 40 S ribosomal subunit proteins S2, S3,
            S4, S5, S6, S7, S8, S9, S13, S23/S24, S27, and S28
  JOURNAL   J Biol Chem 251 (15), 4666-4672 (1976)
   PUBMED   947902
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On May 15, 2023 this sequence version replaced NM_001313935.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CF979411.1, FQ229992.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676785, SAMN16676787
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-28                JAXUCZ010000001.1  74430410-74430437   c
            29-150              JAXUCZ010000001.1  74429984-74430105   c
            151-273             JAXUCZ010000001.1  74429643-74429765   c
            274-460             JAXUCZ010000001.1  74428076-74428262   c
            461-711             JAXUCZ010000001.1  74427084-74427334   c
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..711
                     /gene="Rps9"
                     /gene_synonym="Rps9l1"
                     /note="ribosomal protein S9"
                     /db_xref="GeneID:103689992"
                     /db_xref="RGD:619889"
     exon            1..28
                     /gene="Rps9"
                     /gene_synonym="Rps9l1"
                     /inference="alignment:Splign:2.1.0"
     exon            29..150
                     /gene="Rps9"
                     /gene_synonym="Rps9l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             54..638
                     /gene="Rps9"
                     /gene_synonym="Rps9l1"
                     /note="40S ribosomal protein S9; ribosomal protein S9-like
                     1; 40S ribosomal protein S9-like"
                     /codon_start=1
                     /product="small ribosomal subunit protein uS4"
                     /protein_id="NP_001300864.1"
                     /db_xref="GeneID:103689992"
                     /db_xref="RGD:619889"
                     /translation="MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVW
                     RVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKI
                     EDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFS
                     LRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED"
     exon            151..273
                     /gene="Rps9"
                     /gene_synonym="Rps9l1"
                     /inference="alignment:Splign:2.1.0"
     exon            274..460
                     /gene="Rps9"
                     /gene_synonym="Rps9l1"
                     /inference="alignment:Splign:2.1.0"
     exon            461..711
                     /gene="Rps9"
                     /gene_synonym="Rps9l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tctctttgtc acgggcctga gttcgtaggc gcagcgggcc tagcctagtc aacatgccgg
       61 tcgccagaag ctgggtttgt cgcaaaacct atgtgacccc acggagaccc ttcgagaaat
      121 cgcgtctcga ccaggagcta aagttgattg gagagtatgg gctccggaac aaacgtgagg
      181 tgtggagggt caaatttacc ctggcgaaga ttcgtaaggc tgcccgggag ctgttgacgc
      241 tggacgagaa ggatcctcgg cgtctgtttg aaggcaacgc tctgctgaga cgacttgttc
      301 gaattggggt gctggatgag ggcaagatga agctggatta cattctgggc ctgaagattg
      361 aggatttctt ggagagaagg ctgcagaccc aggtctttaa gctgggcctg gccaaatcta
      421 ttcaccatgc ccgtgtgctc atccgccaac gtcacatcag ggtccgcaag caggtggtga
      481 acattccatc tttcattgtt cgcctggact ctcagaagca cattgacttc tccctccgtt
      541 ctccttatgg tggcggccgc ccaggcagag tgaagaggaa gaatgccaag aaaggccagg
      601 gtggtgctgg agctggtgat gatgaggaag aggattaatt aatatcttgt tgcactggag
      661 gattgtctag ttttccagtt aacaaataaa acagaattga tacttggttt a
//
