LOCUS       NM_031570                666 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribosomal protein S7 (Rps7), mRNA.
ACCESSION   NM_031570 NM_001024280 XM_343041
VERSION     NM_031570.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Zanivan,S., Maione,F., Hein,M.Y., Hernandez-Fernaud,J.R.,
            Ostasiewicz,P., Giraudo,E. and Mann,M.
  TITLE     SILAC-based proteomics of human primary endothelial cell
            morphogenesis unveils tumor angiogenic markers
  JOURNAL   Mol Cell Proteomics 12 (12), 3599-3611 (2013)
   PUBMED   23979707
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   3  (bases 1 to 666)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   4  (bases 1 to 666)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   5  (bases 1 to 666)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   6  (bases 1 to 666)
  AUTHORS   Guillier,M. and Leibovitch,S.
  TITLE     Sequence of a cDNA encoding rat ribosomal protein homologous to
            Xenopus laevis ribosomal protein S8
  JOURNAL   Nucleic Acids Res 19 (6), 1339 (1991)
   PUBMED   2030949
REFERENCE   7  (bases 1 to 666)
  AUTHORS   Suzuki,K., Olvera,J. and Wool,I.G.
  TITLE     The primary structure of rat ribosomal protein S7
  JOURNAL   FEBS Lett 271 (1-2), 51-53 (1990)
   PUBMED   2226813
REFERENCE   8  (bases 1 to 666)
  AUTHORS   Lutsch,G., Stahl,J., Kargel,H.J., Noll,F. and Bielka,H.
  TITLE     Immunoelectron microscopic studies on the location of ribosomal
            proteins on the surface of the 40S ribosomal subunit from rat liver
  JOURNAL   Eur J Cell Biol 51 (1), 140-150 (1990)
   PUBMED   2328735
REFERENCE   9  (bases 1 to 666)
  AUTHORS   Terao,K. and Ogata,K.
  TITLE     Proteins of small subunits of rat liver ribosomes that interact
            with poly(U). II. Cross-links between poly(U) and ribosomal
            proteins in 40 S subunits induced by UV irradiation
  JOURNAL   J Biochem 86 (3), 605-617 (1979)
   PUBMED   511842
REFERENCE   10 (bases 1 to 666)
  AUTHORS   Collatz,E., Wool,I.G., Lin,A. and Stoffler,G.
  TITLE     The isolation of eukaryotic ribosomal proteins. The purification
            and characterization of the 40 S ribosomal subunit proteins S2, S3,
            S4, S5, S6, S7, S8, S9, S13, S23/S24, S27, and S28
  JOURNAL   J Biol Chem 251 (15), 4666-4672 (1976)
   PUBMED   947902
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC060557.1 and AA819435.1.
            
            On or before Sep 16, 2008 this sequence version replaced
            NM_001024280.1, NM_031570.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ210052.1, FQ212121.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMEA5760434
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-538               BC060557.1         5-542
            539-666             AA819435.1         1-128               c
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q16"
     gene            1..666
                     /gene="Rps7"
                     /note="ribosomal protein S7"
                     /db_xref="GeneID:29258"
                     /db_xref="RGD:61907"
     exon            1..26
                     /gene="Rps7"
                     /inference="alignment:Splign:2.1.0"
     exon            27..110
                     /gene="Rps7"
                     /inference="alignment:Splign:2.1.0"
     CDS             36..620
                     /gene="Rps7"
                     /EC_number="3.6.5.3"
                     /note="40S ribosomal protein S7; S8"
                     /codon_start=1
                     /product="small ribosomal subunit protein eS7"
                     /protein_id="NP_113758.2"
                     /db_xref="GeneID:29258"
                     /db_xref="RGD:61907"
                     /translation="MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELN
                     ITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILP
                     KPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDK
                     AQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL"
     exon            111..182
                     /gene="Rps7"
                     /inference="alignment:Splign:2.1.0"
     exon            183..326
                     /gene="Rps7"
                     /inference="alignment:Splign:2.1.0"
     exon            327..391
                     /gene="Rps7"
                     /inference="alignment:Splign:2.1.0"
     exon            392..542
                     /gene="Rps7"
                     /inference="alignment:Splign:2.1.0"
     exon            543..653
                     /gene="Rps7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctctttctaa gccggcactc cgtaaggacg aagccatgtt cagctcgagc gccaagattg
       61 tgaagcccaa tggcgagaag ccggacgagt tcgagtctgg catctctcag gcgctgctcg
      121 agctggagat gaactcggat ctgaaggcgc agctgcggga actcaacatc accgcggcaa
      181 aggaaatcga agtcggtggt ggtcgaaaag ccatcataat ttttgtacca gttcctcagc
      241 tgaaatcttt ccagaaaatc caagtccggc tagttcgtga attggagaaa aagttcagtg
      301 ggaaacacgt agtcttcatt gctcagagga ggattctgcc caagccaacc cgaaaaagcc
      361 gtacgaaaaa taagcaaaag cgccccagaa gccgcaccct gacagcagtg cacgacgcca
      421 tccttgagga tttggtcttc ccaagtgaaa ttgtgggcaa gaggatccgt gtgaaactgg
      481 atggcagccg gctcataaaa gttcatttag acaaagcaca gcagaacaac gtggagcaca
      541 aggtcgaaac tttttctggc gtgtacaaga agctcacagg caaggatgtt aactttgaat
      601 tcccagagtt tcagttgtaa agaaaatgac tgaataaaat gtcattcata ataaaaaaaa
      661 aaaaaa
//
