LOCUS       NM_001415790            3932 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ribosomal protein S6 kinase C1 (Rps6kc1),
            transcript variant 2, mRNA.
ACCESSION   NM_001415790 XM_006250459
VERSION     NM_001415790.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3932)
  AUTHORS   Distler,U., Schmeisser,M.J., Pelosi,A., Reim,D., Kuharev,J.,
            Weiczner,R., Baumgart,J., Boeckers,T.M., Nitsch,R., Vogt,J. and
            Tenzer,S.
  TITLE     In-depth protein profiling of the postsynaptic density from mouse
            hippocampus using data-independent acquisition proteomics
  JOURNAL   Proteomics 14 (21-22), 2607-2613 (2014)
   PUBMED   25211037
REFERENCE   2  (bases 1 to 3932)
  AUTHORS   Liu,L., Yang,C., Yuan,J., Chen,X., Xu,J., Wei,Y., Yang,J., Lin,G.
            and Yu,L.
  TITLE     RPK118, a PX domain-containing protein, interacts with
            peroxiredoxin-3 through pseudo-kinase domains
  JOURNAL   Mol Cells 19 (1), 39-45 (2005)
   PUBMED   15750338
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On Dec 30, 2022 this sequence version replaced XM_006250459.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643296.32581.1,
                                           SRR26643294.49120.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-191               JAXUCZ010000013.1  105021245-105021435 c
            192-227             JAXUCZ010000013.1  105014535-105014570 c
            228-348             JAXUCZ010000013.1  105009022-105009142 c
            349-464             JAXUCZ010000013.1  104997382-104997497 c
            465-558             JAXUCZ010000013.1  104994799-104994892 c
            559-918             JAXUCZ010000013.1  104978806-104979165 c
            919-1034            JAXUCZ010000013.1  104954070-104954185 c
            1035-1127           JAXUCZ010000013.1  104943128-104943220 c
            1128-1175           JAXUCZ010000013.1  104913141-104913188 c
            1176-1308           JAXUCZ010000013.1  104911961-104912093 c
            1309-2844           JAXUCZ010000013.1  104901507-104903042 c
            2845-2934           JAXUCZ010000013.1  104901147-104901236 c
            2935-3017           JAXUCZ010000013.1  104886807-104886889 c
            3018-3113           JAXUCZ010000013.1  104885698-104885793 c
            3114-3932           JAXUCZ010000013.1  104877296-104878114 c
FEATURES             Location/Qualifiers
     source          1..3932
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q27"
     gene            1..3932
                     /gene="Rps6kc1"
                     /note="ribosomal protein S6 kinase C1"
                     /db_xref="GeneID:289342"
                     /db_xref="RGD:1306578"
     exon            1..191
                     /gene="Rps6kc1"
                     /inference="alignment:Splign:2.1.0"
     CDS             87..3224
                     /gene="Rps6kc1"
                     /EC_number="2.7.11.1"
                     /note="isoform 2 is encoded by transcript variant 2;
                     ribosomal protein S6 kinase, 52kDa, polypeptide 1;
                     ribosomal protein S6 kinase delta-1; ribosomal protein S6
                     kinase, polypeptide 1; ribosomal protein S6 kinase,
                     polypeptide C1"
                     /codon_start=1
                     /product="ribosomal protein S6 kinase delta-1 isoform 2"
                     /protein_id="NP_001402719.1"
                     /db_xref="GeneID:289342"
                     /db_xref="RGD:1306578"
                     /translation="MTSPWGHSADLARFYTVTEPQRHPRGYTIYKVTARVVSRRNPED
                     VQEIIVWRRYSDFKKLHRELWQIHRNAFRHSELFPPFAKGTVFGRFDKTVIEERRQCA
                     EDLLQFSANIPALYNSKQLQDFFKGGIISDGSELIGPAEAYPDSLANTFSECGTEGFS
                     SDSDLLSLTVDADSLAEVDDGMASRQGSPSRAFGLSVSADSSAVGAVASDIEPSKAED
                     RESRSLFPSSLKPRLGRRDYLEKAGELIKLALKKEEEDDYEAASDFYRKGVDLLLEGV
                     QGESSPTRREAVKRRTAEYLMRAESICSLRVTAQLDTGPQPPGALSSRPPWNLRSPAE
                     ELKAFRVLGVIDKVLLVMDTRTEQTFILKGLRKSSECSRNRKTIIPRCVPNMVCLHTY
                     IISEESVFLVLQHAEGGKLWSYISKFLNRSSRESLDIKEARPPMPPRVRLQQPSASPQ
                     GSYSVESRGSDTGSMLKVLPLKTSLTPSSQDDSNQEDDGQDSSPKWPDSGSSSEEECT
                     AGYLTLCNEYGQEKLDLTSLNEESVMQPEGENADSQAVRSFPASLTADSASPSTQLKF
                     FPGDEGLEAVCSPRTSDSLRRSKNSPMEFFRIDSKDSTSELLGLDSGEKLHSLKPEPL
                     KALFTLEDGDSPSQSFDAGKSQGESEAQDSISRGSDDSVPVISFKEAASEDVCSAEEG
                     RPDLLVNLPGELQPTKETSAVDPTKFSQASIGRLEAPDVLCLRLSSEQCHDLGQEGPE
                     ELSHPTEFRPGGVTPERSAQADLGVLFTATVDHSSSQDQFLFSSLHSESDRLGQVEGA
                     VTSQDLQESLFHIASPCSGAKEDSAHTDTATSEEVLLFTEPSKEGDSEAKVRSVGAGG
                     AEKEVHQIFEDLDQRLAVSARLFIPEGCIQRWAAEMVVALDALHREGIVCRDLNPNNI
                     LLNDGGHIQLTYFSRWSEVEDLCDSDAIARMYCAPEVGAVTEETEACDWWSLGAVLFE
                     LLTGKTLVECHPAGINTHTTLNMPDCVSEEARSLIQQLLQFNPMERLGAGVAGVEDIK
                     SHPFFTPVDWAELTR"
     exon            192..227
                     /gene="Rps6kc1"
                     /inference="alignment:Splign:2.1.0"
     exon            228..348
                     /gene="Rps6kc1"
                     /inference="alignment:Splign:2.1.0"
     exon            349..464
                     /gene="Rps6kc1"
                     /inference="alignment:Splign:2.1.0"
     exon            465..558
                     /gene="Rps6kc1"
                     /inference="alignment:Splign:2.1.0"
     exon            559..918
                     /gene="Rps6kc1"
                     /inference="alignment:Splign:2.1.0"
     exon            919..1034
                     /gene="Rps6kc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1035..1127
                     /gene="Rps6kc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1128..1175
                     /gene="Rps6kc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1176..1308
                     /gene="Rps6kc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1309..2844
                     /gene="Rps6kc1"
                     /inference="alignment:Splign:2.1.0"
     exon            2845..2934
                     /gene="Rps6kc1"
                     /inference="alignment:Splign:2.1.0"
     exon            2935..3017
                     /gene="Rps6kc1"
                     /inference="alignment:Splign:2.1.0"
     exon            3018..3113
                     /gene="Rps6kc1"
                     /inference="alignment:Splign:2.1.0"
     exon            3114..3932
                     /gene="Rps6kc1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctctcgtgc tctgtgctgc gtggagtctg ccgcggctgg ggctgcccga tgatccccag
       61 ctggcggaag cacgggcgga gggaggatga cctctccttg gggtcacagt gcggacctgg
      121 cccgcttcta cactgtcacc gagccccagc gacaccctag gggctacacg atctataagg
      181 ttaccgcacg ggtcgtttca cgaagaaatc cggaggacgt ccaggagata attgtgtgga
      241 gaagatacag tgactttaag aagctgcaca gagagctatg gcagattcac aggaacgcat
      301 ttcgacactc tgagctgttt cccccgtttg ctaaagggac agtgtttggg cgatttgaca
      361 aaaccgtaat tgaggaacga cgtcagtgtg ctgaggacct gctacagttc tctgccaaca
      421 tccctgctct gtacaacagc aagcagctcc aggacttctt taagggtggg ataattagtg
      481 atggctctga gttaattggc cctgctgaag cttacccaga ctccctggcc aacacctttt
      541 ctgagtgtgg tactgaaggc ttctccagtg acagtgacct cctgtccctc actgttgatg
      601 cggactctct tgccgaggta gatgatggaa tggcttcccg tcagggttct cccagtagag
      661 cttttggtct gagtgtgtct gcggattctt cggcagtagg ggctgttgct tctgacattg
      721 aaccaagcaa agcagaagac cgggaaagcc gcagcctctt ccccagcagc ttaaagccaa
      781 ggcttggcag gagagattac ctggagaagg caggggaact tatcaaactg gccttaaaga
      841 aggaggagga agatgactat gaagcagctt ctgactttta caggaagggt gttgatctgc
      901 tcctagaagg tgtacaagga gagtcgagcc ccacgcgccg ggaggctgtg aagagaagga
      961 cagcagagta cctcatgcgt gcagagagca tctgtagcct ccgggtcaca gcccagcttg
     1021 acacaggccc acagcctcca ggagcactaa gttcaaggcc cccttggaac ctaaggagcc
     1081 ctgccgagga gctgaaggcc ttcagagtcc ttggggtgat tgacaaggtt ttacttgtaa
     1141 tggacacaag gacagaacag acattcattt taaaaggtct caggaaaagc agcgagtgca
     1201 gcaggaacag gaagaccatc atcccccgct gtgtgcctaa catggtgtgt ctgcacacat
     1261 acatcatctc ggaggagtcg gtgtttctcg tgctgcagca cgccgaaggt ggcaaactct
     1321 ggtcatatat cagtaaattt ctgaacagaa gctctcgaga aagcttggac attaaggagg
     1381 cgagaccgcc catgcctcct cgagtgcgcc tgcagcagcc aagtgctagt cctcagggca
     1441 gctacagtgt tgagtccaga gggagcgaca cagggagcat gctgaaggtt ctgcccctga
     1501 agactagcct caccccgagt tctcaggacg atagtaacca ggaagatgat gggcaggaca
     1561 gctctcccaa gtggcccgat tcgggctcca gctcagagga agagtgcaca gctggctact
     1621 taacgctgtg caacgaatat gggcaagaaa agcttgacct tacatctttg aatgaggagt
     1681 ctgtcatgca gcctgaaggg gagaatgctg atagccaagc tgttaggagc ttcccagcat
     1741 ccctcaccgc tgacagtgca agccccagca cccagctcaa gttcttccct ggagacgagg
     1801 gcctagaagc agtttgttct cctcgaacat ctgattccct caggaggtcg aaaaacagtc
     1861 ctatggagtt cttccgaata gacagtaaag acagcacaag tgagctcttg ggactggatt
     1921 ctggtgagaa attacacagt ctgaaaccag agcctttgaa agcactcttt acccttgaag
     1981 atggagacag tccttcccag agttttgatg ccggcaagag ccagggagag agtgaagctc
     2041 aggactccat cagcaggggc tcagatgact ccgtcccggt tatctcattt aaagaggctg
     2101 cctctgagga tgtctgtagt gctgaggaag ggaggcctga ccttcttgtg aatctacctg
     2161 gtgaactgca gccaaccaaa gagacttcag cagtggaccc tactaagttt tcacaggcca
     2221 gcataggcag gctggaagcc ccggatgtgt tgtgcctcag gctgagttct gaacagtgcc
     2281 atgacctggg acaagaaggc ccagaggaac tgagccatcc cactgaattc cgtcctggtg
     2341 gtgtgacccc agagcgcagt gctcaggcag atcttggggt gttgttcacg gctacagttg
     2401 atcacagcag ctcacaagac cagtttctgt tttccagctt gcattcagag tctgacaggc
     2461 tggggcaggt ggagggagcg gtcacttcac aggacttgca agaaagccta ttccacattg
     2521 ctagtccatg ctcaggtgct aaagaagaca gcgcacacac agacactgcc acgtctgagg
     2581 aagtgctgct gttcacagag ccgagcaaag aaggagactc ggaggccaag gtgcggagtg
     2641 tgggagccgg gggagcggag aaggaagtcc atcagatctt cgaggacctg gaccagcgac
     2701 tagcagtaag cgccaggctc ttcatcccag agggctgcat tcaaagatgg gcagcagaga
     2761 tggtggtagc cctggacgcc ttgcatagag aggggattgt gtgccgagat ctgaacccaa
     2821 acaacatctt attgaatgat ggaggacaca ttcagctaac gtattttagc aggtggagtg
     2881 aggttgaaga tctctgtgac agcgacgcca tagcgagaat gtactgcgcc ccagaggttg
     2941 gagcagtcac agaagaaact gaagcctgtg attggtggag cctgggtgct gtcctcttcg
     3001 aacttctcac tggcaagaca ttggtggaat gccacccagc gggaataaat actcacacta
     3061 ctttgaacat gccagattgt gtttctgaag aggcccgctc actcatccaa cagctcctgc
     3121 agttcaaccc tatggagcgt ctgggtgcag gagtggccgg tgttgaagat atcaaatctc
     3181 acccgttctt cacccctgtg gattgggcag aactgacaag atgaacatca catggagtgt
     3241 ccttacagga cagatcccct tgtgacagga gtggctgggc ttcaggcacc ctgcagctaa
     3301 tgtgacagag ccttgggaca aggaccctaa ggaagtgatg gggcaggagg ctaacagatt
     3361 tgcttacact tctgtctgga aaggaactgc tcgccacgcc agcagctgct atgtgcacat
     3421 ctcgcgatga gatgtaactt attcaaggtt gcgggcatgt tgcagacaag actgaaacat
     3481 gagtgcctgt gtaacgcctc tgccaggggg ctggaactgc agaaggaagg ttgacgtgag
     3541 tcaaggacct tgtagcaacc gatggtgttt ctgctaagca agactggttt acacaatagc
     3601 atcaatattt gctgagtaac actaaatgtg ctctgtggac agtgtcacta gtgggctggc
     3661 aaagcaaagt ggcgtgccca gtgctgagca ggccggttat ctctgaggaa aacctctcac
     3721 cagcttagag cttgctggtc aatgctgcta actgaggggc tcctctctcc cctgccctat
     3781 ttcctgcatt ctctgcttct tctcttggat tccgcctttc ctacttctgt taacacacat
     3841 gcaacgagaa agggaagggg catttattcc ccaaactgcc atcttaacag gactaagaaa
     3901 tcatggtgtc aaataaatgt gactaaacct tg
//
