LOCUS       NM_001007600             978 bp    mRNA    linear   ROD 04-APR-2024
DEFINITION  Rattus norvegicus ribosomal protein S4, X-linked (Rps4x), mRNA.
ACCESSION   NM_001007600 XM_002730258 XM_003754775
VERSION     NM_001007600.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 978)
  AUTHORS   Zanivan,S., Maione,F., Hein,M.Y., Hernandez-Fernaud,J.R.,
            Ostasiewicz,P., Giraudo,E. and Mann,M.
  TITLE     SILAC-based proteomics of human primary endothelial cell
            morphogenesis unveils tumor angiogenic markers
  JOURNAL   Mol Cell Proteomics 12 (12), 3599-3611 (2013)
   PUBMED   23979707
REFERENCE   2  (bases 1 to 978)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   3  (bases 1 to 978)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   4  (bases 1 to 978)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   5  (bases 1 to 978)
  AUTHORS   Kuo,J.C., Han,X., Hsiao,C.T., Yates,J.R. 3rd and Waterman,C.M.
  TITLE     Analysis of the myosin-II-responsive focal adhesion proteome
            reveals a role for beta-Pix in negative regulation of focal
            adhesion maturation
  JOURNAL   Nat Cell Biol 13 (4), 383-393 (2011)
   PUBMED   21423176
REFERENCE   6  (bases 1 to 978)
  AUTHORS   Zinn,A.R., Alagappan,R.K., Brown,L.G., Wool,I. and Page,D.C.
  TITLE     Structure and function of ribosomal protein S4 genes on the human
            and mouse sex chromosomes
  JOURNAL   Mol Cell Biol 14 (4), 2485-2492 (1994)
   PUBMED   8139551
REFERENCE   7  (bases 1 to 978)
  AUTHORS   Haviryaji,K.S., Srinivas,R., Suryanarayana,T. and Vemuri,M.C.
  TITLE     Effect of ethanol on hepatic ribosomal proteins and mRNA
  JOURNAL   Mol Cell Biochem 115 (2), 143-147 (1992)
   PUBMED   1448059
REFERENCE   8  (bases 1 to 978)
  AUTHORS   Watanabe,M., Furuno,N., Goebl,M., Go,M., Miyauchi,K., Sekiguchi,T.,
            Basilico,C. and Nishimito,T.
  TITLE     Molecular cloning of the human gene, CCG2, that complements the
            BHK-derived temperature-sensitive cell cycle mutant tsBN63:
            identity of CCG2 with the human X chromosomal SCAR/RPS4X gene
  JOURNAL   J Cell Sci 100 (Pt 1), 35-43 (1991)
   PUBMED   1795030
REFERENCE   9  (bases 1 to 978)
  AUTHORS   Wool,I.G., Chan,Y.L., Paz,V. and Olvera,J.
  TITLE     The primary structure of rat ribosomal proteins: the amino acid
            sequences of L27a and L28 and corrections in the sequences of S4
            and S12
  JOURNAL   Biochim Biophys Acta 1050 (1-3), 69-73 (1990)
   PUBMED   2207170
REFERENCE   10 (bases 1 to 978)
  AUTHORS   Devi,K.R., Chan,Y.L. and Wool,I.G.
  TITLE     The primary structure of rat ribosomal protein S4
  JOURNAL   Biochim Biophys Acta 1008 (2), 258-262 (1989)
   PUBMED   2660908
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1, FN800320.1 and BC086560.1.
            
            On or before Apr 7, 2015 this sequence version replaced
            XM_002730258.3, XM_003754775.3, NM_001007600.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ230280.1, FQ226324.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-37                JAXUCZ010000021.1  71342885-71342921   c
            38-733              FN800320.1         1-696
            734-978             BC086560.1         671-915
FEATURES             Location/Qualifiers
     source          1..978
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq22"
     gene            1..978
                     /gene="Rps4x"
                     /note="ribosomal protein S4, X-linked"
                     /db_xref="GeneID:100362640"
                     /db_xref="RGD:2324318"
     exon            1..66
                     /gene="Rps4x"
                     /inference="alignment:Splign:2.1.0"
     CDS             64..855
                     /gene="Rps4x"
                     /note="ribosomal protein S4, X-linked X-like"
                     /codon_start=1
                     /product="small ribosomal subunit protein eS4"
                     /protein_id="NP_001007601.1"
                     /db_xref="GeneID:100362640"
                     /db_xref="RGD:2324318"
                     /translation="MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPL
                     IIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLI
                     YDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTI
                     QIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSF
                     ATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG"
     exon            67..144
                     /gene="Rps4x"
                     /inference="alignment:Splign:2.1.0"
     exon            145..325
                     /gene="Rps4x"
                     /inference="alignment:Splign:2.1.0"
     exon            326..423
                     /gene="Rps4x"
                     /inference="alignment:Splign:2.1.0"
     exon            424..595
                     /gene="Rps4x"
                     /inference="alignment:Splign:2.1.0"
     exon            596..753
                     /gene="Rps4x"
                     /inference="alignment:Splign:2.1.0"
     exon            754..949
                     /gene="Rps4x"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctccgaccct aatttcttcg ttcgccggaa gaaggcgagt ctctttccgt tcccagcgca
       61 gccatggctc gtggtcccaa gaaacatctg aagcgcgtag cggctccaaa acactggatg
      121 ctggataagc tgactggcgt gtttgctcct cgtccatcca ctggtccaca caaactgagg
      181 gaatgcctgc ctctgatcat tttcctaagg aacagactta agtatgccct gactggagat
      241 gaagtaaaaa agatttgcat gcagcgattc attaagattg atgggaaagt caggaccgat
      301 ataacctacc ctgctgggtt tatggatgtc atcagcattg acaagactgg agagaacttc
      361 cgtctgatct atgacaccaa gggtcgcttt gctgttcatc gaattacacc tgaggaggcc
      421 aagtacaagt tgtgcaaagt gagaaagatc tttgtgggca caaaaggaat cccacatctg
      481 gtgacccatg atgcccgtac tattcgatac cctgatcccc tcatcaaggt gaatgacacc
      541 attcagattg atttggaaac aggcaagata actgatttca tcaagttcga cactgggaac
      601 ctgtgtatgg tgactggagg tgctaacttg gggagaattg gtgtaatcac caatagggag
      661 agacatcctg gctcttttga tgtggttcat gtgaaagatg ccaacggcaa cagctttgcc
      721 actcgtcttt ccaacatttt tgttattggc aagggcaaca aaccgtggat ttctcttccc
      781 cgaggaaaag gaatccgcct taccattgct gaagagagag acaagaggct agcagccaaa
      841 cagagcagtg ggtgaaatgg tctctaggag acatgctgga ggagtatttg tactcaacac
      901 aacaagcctt tctaagcaac atgctagatt aaacagcatg atgaaatcaa aaaaaaaaaa
      961 aaaaaaaaaa aaaaaaaa
//
