LOCUS       NM_017153                880 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribosomal protein S3a (Rps3a), mRNA.
ACCESSION   NM_017153
VERSION     NM_017153.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 880)
  AUTHORS   Milochau,A., Lagree,V., Benassy,M.N., Chaignepain,S., Papin,J.,
            Garcia-Arcos,I., Lajoix,A., Monterrat,C., Coudert,L.,
            Schmitter,J.M., Ochoa,B. and Lang,J.
  TITLE     Synaptotagmin 11 interacts with components of the RNA-induced
            silencing complex RISC in clonal pancreatic beta-cells
  JOURNAL   FEBS Lett 588 (14), 2217-2222 (2014)
   PUBMED   24882364
REFERENCE   2  (bases 1 to 880)
  AUTHORS   Zanivan,S., Maione,F., Hein,M.Y., Hernandez-Fernaud,J.R.,
            Ostasiewicz,P., Giraudo,E. and Mann,M.
  TITLE     SILAC-based proteomics of human primary endothelial cell
            morphogenesis unveils tumor angiogenic markers
  JOURNAL   Mol Cell Proteomics 12 (12), 3599-3611 (2013)
   PUBMED   23979707
REFERENCE   3  (bases 1 to 880)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   4  (bases 1 to 880)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   5  (bases 1 to 880)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   6  (bases 1 to 880)
  AUTHORS   Haviryaji,K.S., Srinivas,R., Suryanarayana,T. and Vemuri,M.C.
  TITLE     Effect of ethanol on hepatic ribosomal proteins and mRNA
  JOURNAL   Mol Cell Biochem 115 (2), 143-147 (1992)
   PUBMED   1448059
REFERENCE   7  (bases 1 to 880)
  AUTHORS   Kho,C.J. and Zarbl,H.
  TITLE     Fte-1, a v-fos transformation effector gene, encodes the mammalian
            homologue of a yeast gene involved in protein import into
            mitochondria
  JOURNAL   Proc Natl Acad Sci U S A 89 (6), 2200-2204 (1992)
   PUBMED   1549582
REFERENCE   8  (bases 1 to 880)
  AUTHORS   Lutsch,G., Stahl,J., Kargel,H.J., Noll,F. and Bielka,H.
  TITLE     Immunoelectron microscopic studies on the location of ribosomal
            proteins on the surface of the 40S ribosomal subunit from rat liver
  JOURNAL   Eur J Cell Biol 51 (1), 140-150 (1990)
   PUBMED   2328735
REFERENCE   9  (bases 1 to 880)
  AUTHORS   Bommer,U.A., Stahl,J., Henske,A., Lutsch,G. and Bielka,H.
  TITLE     Identification of proteins of the 40 S ribosomal subunit involved
            in interaction with initiation factor eIF-2 in the quaternary
            initiation complex by means of monospecific antibodies
  JOURNAL   FEBS Lett 233 (1), 114-118 (1988)
   PUBMED   3384085
REFERENCE   10 (bases 1 to 880)
  AUTHORS   Collatz,E., Ulbrich,N., Tsurugi,K., Lightfoot,H.N., MacKinlay,W.,
            Lin,A. and Wool,I.G.
  TITLE     Isolation of eukaryotic ribosomal proteins. Purification and
            characterization of the 40 S ribosomal subunit proteins Sa, Sc,
            S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18,
            S19, S20, S21, S26, S27', and S29
  JOURNAL   J Biol Chem 252 (24), 9071-9080 (1977)
   PUBMED   925037
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from X75161.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ211708.1, FQ216850.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5756307, SAMEA5760383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..880
                     /gene="Rps3a"
                     /note="ribosomal protein S3a"
                     /db_xref="GeneID:29288"
                     /db_xref="RGD:62078"
     exon            1..86
                     /gene="Rps3a"
                     /inference="alignment:Splign:2.1.0"
     CDS             25..819
                     /gene="Rps3a"
                     /EC_number="3.6.5.3"
                     /note="V-fos transformation effector protein; 40S
                     ribosomal protein S3a"
                     /codon_start=1
                     /product="small ribosomal subunit protein eS1"
                     /protein_id="NP_058849.1"
                     /db_xref="GeneID:29288"
                     /db_xref="RGD:62078"
                     /translation="MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNI
                     GKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHG
                     MDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQ
                     VRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKML
                     KKPKFELGKLMELHGEGGSSGKTTGDETGAKVERADGYEPPVQESV"
     exon            87..190
                     /gene="Rps3a"
                     /inference="alignment:Splign:2.1.0"
     exon            191..378
                     /gene="Rps3a"
                     /inference="alignment:Splign:2.1.0"
     exon            379..587
                     /gene="Rps3a"
                     /inference="alignment:Splign:2.1.0"
     exon            588..697
                     /gene="Rps3a"
                     /inference="alignment:Splign:2.1.0"
     exon            698..863
                     /gene="Rps3a"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      862
                     /gene="Rps3a"
ORIGIN      
        1 ccttttggct ctcagagcgg caccatggcg gtcgggaaga acaagcgcct gacgaaaggt
       61 ggcaagaagg gagccaagaa gaaagtggtt gatccatttt ctaagaaaga ctggtatgat
      121 gtgaaagctc cagcaatgtt caatattagg aacatcggga aaacactagt tacaaggact
      181 caaggaacca aaattgcatc agatggcctc aagggtcgtg tgttcgaagt gagtcttgca
      241 gatctacaga acgatgaagt tgcatttaga aagttcaagc taattactga ggatgttcag
      301 ggcaaaaact gtctgactaa cttccatggc atggatctta cccgggacaa aatgtgctcc
      361 atggtcaaaa agtggcagac catgattgaa gctcatgttg atgtgaagac gaccgatggg
      421 tatttgctcc gacttttctg tgttggtttc actaagaaac gtaacaacca gattagaaag
      481 acatcctatg cgcagcacca gcaggtccgc cagatccgca agaagatgat ggagatcatg
      541 acccgagaag tgcagacaaa tgacttgaag gaagtagtta ataaactgat tccagacagc
      601 attgggaaag acatagagaa ggcttgccag tccatctatc ctctccatga cgtttttgtt
      661 aggaaagtca aaatgctgaa gaaacccaag tttgaattgg gaaaactcat ggagctccat
      721 ggtgaaggcg gtagttctgg caaaacaact ggtgatgaga caggtgctaa ggttgaacga
      781 gctgatggct atgaaccacc agtccaagaa tccgtttaaa atccagattt ttaatagcga
      841 caaataaaaa gtcctatttg tgaaaaaaaa aaaaaaaaaa
//
