LOCUS       NM_012876                340 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus ribosomal protein S29 (Rps29), mRNA.
ACCESSION   NM_012876
VERSION     NM_012876.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 340)
  AUTHORS   Behrmann,E., Loerke,J., Budkevich,T.V., Yamamoto,K., Schmidt,A.,
            Penczek,P.A., Vos,M.R., Burger,J., Mielke,T., Scheerer,P. and
            Spahn,C.M.
  TITLE     Structural snapshots of actively translating human ribosomes
  JOURNAL   Cell 161 (4), 845-857 (2015)
   PUBMED   25957688
REFERENCE   2  (bases 1 to 340)
  AUTHORS   Voorhees,R.M., Fernandez,I.S., Scheres,S.H. and Hegde,R.S.
  TITLE     Structure of the mammalian ribosome-Sec61 complex to 3.4 A
            resolution
  JOURNAL   Cell 157 (7), 1632-1643 (2014)
   PUBMED   24930395
REFERENCE   3  (bases 1 to 340)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   4  (bases 1 to 340)
  AUTHORS   Kuo,J.C., Han,X., Hsiao,C.T., Yates,J.R. 3rd and Waterman,C.M.
  TITLE     Analysis of the myosin-II-responsive focal adhesion proteome
            reveals a role for beta-Pix in negative regulation of focal
            adhesion maturation
  JOURNAL   Nat Cell Biol 13 (4), 383-393 (2011)
   PUBMED   21423176
REFERENCE   5  (bases 1 to 340)
  AUTHORS   O'Donohue,M.F., Choesmel,V., Faubladier,M., Fichant,G. and
            Gleizes,P.E.
  TITLE     Functional dichotomy of ribosomal proteins during the synthesis of
            mammalian 40S ribosomal subunits
  JOURNAL   J Cell Biol 190 (5), 853-866 (2010)
   PUBMED   20819938
REFERENCE   6  (bases 1 to 340)
  AUTHORS   Khanna,N., Reddy,V.G., Tuteja,N. and Singh,N.
  TITLE     Differential gene expression in apoptosis: identification of
            ribosomal protein S29 as an apoptotic inducer
  JOURNAL   Biochem Biophys Res Commun 277 (2), 476-486 (2000)
   PUBMED   11032747
REFERENCE   7  (bases 1 to 340)
  AUTHORS   Kondoh,N., Noda,M., Fisher,R.J., Schweinfest,C.W., Papas,T.S.,
            Kondoh,A., Samuel,K.P. and Oikawa,T.
  TITLE     The S29 ribosomal protein increases tumor suppressor activity of K
            rev-1 gene on v-K ras-transformed NIH3T3 cells
  JOURNAL   Biochim Biophys Acta 1313 (1), 41-46 (1996)
   PUBMED   8781548
REFERENCE   8  (bases 1 to 340)
  AUTHORS   Vladimirov,S.N., Ivanov,A.V., Karpova,G.G., Musolyamov,A.K.,
            Egorov,T.A., Thiede,B., Wittmann-Liebold,B. and Otto,A.
  TITLE     Characterization of the human small-ribosomal-subunit proteins by
            N-terminal and internal sequencing, and mass spectrometry
  JOURNAL   Eur J Biochem 239 (1), 144-149 (1996)
   PUBMED   8706699
REFERENCE   9  (bases 1 to 340)
  AUTHORS   Chan,Y.L., Suzuki,K., Olvera,J. and Wool,I.G.
  TITLE     Zinc finger-like motifs in rat ribosomal proteins S27 and S29
  JOURNAL   Nucleic Acids Res 21 (3), 649-655 (1993)
   PUBMED   8441676
REFERENCE   10 (bases 1 to 340)
  AUTHORS   Collatz,E., Ulbrich,N., Tsurugi,K., Lightfoot,H.N., MacKinlay,W.,
            Lin,A. and Wool,I.G.
  TITLE     Isolation of eukaryotic ribosomal proteins. Purification and
            characterization of the 40 S ribosomal subunit proteins Sa, Sc,
            S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18,
            S19, S20, S21, S26, S27', and S29
  JOURNAL   J Biol Chem 252 (24), 9071-9080 (1977)
   PUBMED   925037
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Jul 18, 2022 this sequence version replaced NM_012876.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ223735.1, FQ211411.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760476
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-121               JAXUCZ010000006.1  93372571-93372691   c
            122-221             JAXUCZ010000006.1  93372242-93372341   c
            222-340             JAXUCZ010000006.1  93371293-93371411   c
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q24"
     gene            1..340
                     /gene="Rps29"
                     /note="ribosomal protein S29"
                     /db_xref="GeneID:25348"
                     /db_xref="RGD:3596"
     exon            1..121
                     /gene="Rps29"
                     /inference="alignment:Splign:2.1.0"
     CDS             60..230
                     /gene="Rps29"
                     /note="40S ribosomal protein S29"
                     /codon_start=1
                     /product="small ribosomal subunit protein uS14"
                     /protein_id="NP_037008.1"
                     /db_xref="GeneID:25348"
                     /db_xref="RGD:3596"
                     /translation="MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFR
                     QYAKDIGFIKLD"
     exon            122..221
                     /gene="Rps29"
                     /inference="alignment:Splign:2.1.0"
     exon            222..340
                     /gene="Rps29"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaagagcgca tgcgtgcgcc agctcgttcc tttttcctcc ttgggcgtct gaaggcaaga
       61 tgggtcacca gcagctctac tggagtcacc cgcggaagtt cggccagggt tctcgctctt
      121 gccgcgtctg ctctaaccgc cacggtctga tccgtaaata cgggctgaac atgtgccgac
      181 agtgcttccg tcagtacgcg aaggacatag gcttcattaa gttggactaa gcgacctgaa
      241 tggatgattc gactgtctac ccaatgaaac caactgtcta ccctgtgata ccaatcatgc
      301 tagtctttgt gcacacagaa taaaaaactg aaggcctcta
//
