LOCUS       NM_001105730             339 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribosomal protein S28 (Rps28), mRNA.
ACCESSION   NM_001105730
VERSION     NM_001105730.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 339)
  AUTHORS   Behrmann,E., Loerke,J., Budkevich,T.V., Yamamoto,K., Schmidt,A.,
            Penczek,P.A., Vos,M.R., Burger,J., Mielke,T., Scheerer,P. and
            Spahn,C.M.
  TITLE     Structural snapshots of actively translating human ribosomes
  JOURNAL   Cell 161 (4), 845-857 (2015)
   PUBMED   25957688
REFERENCE   2  (bases 1 to 339)
  AUTHORS   Gripp,K.W., Curry,C., Olney,A.H., Sandoval,C., Fisher,J.,
            Chong,J.X., Pilchman,L., Sahraoui,R., Stabley,D.L. and
            Sol-Church,K.
  CONSRTM   UW Center for Mendelian Genomics
  TITLE     Diamond-Blackfan anemia with mandibulofacial dystostosis is
            heterogeneous, including the novel DBA genes TSR2 and RPS28
  JOURNAL   Am J Med Genet A 164A (9), 2240-2249 (2014)
   PUBMED   24942156
REFERENCE   3  (bases 1 to 339)
  AUTHORS   Voorhees,R.M., Fernandez,I.S., Scheres,S.H. and Hegde,R.S.
  TITLE     Structure of the mammalian ribosome-Sec61 complex to 3.4 A
            resolution
  JOURNAL   Cell 157 (7), 1632-1643 (2014)
   PUBMED   24930395
REFERENCE   4  (bases 1 to 339)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   5  (bases 1 to 339)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   6  (bases 1 to 339)
  AUTHORS   Yu,Y., Ji,H., Doudna,J.A. and Leary,J.A.
  TITLE     Mass spectrometric analysis of the human 40S ribosomal subunit:
            native and HCV IRES-bound complexes
  JOURNAL   Protein Sci 14 (6), 1438-1446 (2005)
   PUBMED   15883184
REFERENCE   7  (bases 1 to 339)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
REFERENCE   8  (bases 1 to 339)
  AUTHORS   Vladimirov,S.N., Ivanov,A.V., Karpova,G.G., Musolyamov,A.K.,
            Egorov,T.A., Thiede,B., Wittmann-Liebold,B. and Otto,A.
  TITLE     Characterization of the human small-ribosomal-subunit proteins by
            N-terminal and internal sequencing, and mass spectrometry
  JOURNAL   Eur J Biochem 239 (1), 144-149 (1996)
   PUBMED   8706699
REFERENCE   9  (bases 1 to 339)
  AUTHORS   Chan,Y.L., Olvera,J. and Wool,I.G.
  TITLE     The primary structure of rat ribosomal protein S28
  JOURNAL   Biochem Biophys Res Commun 179 (1), 314-318 (1991)
   PUBMED   1679328
REFERENCE   10 (bases 1 to 339)
  AUTHORS   Collatz,E., Wool,I.G., Lin,A. and Stoffler,G.
  TITLE     The isolation of eukaryotic ribosomal proteins. The purification
            and characterization of the 40 S ribosomal subunit proteins S2, S3,
            S4, S5, S6, S7, S8, S9, S13, S23/S24, S27, and S28
  JOURNAL   J Biol Chem 251 (15), 4666-4672 (1976)
   PUBMED   947902
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474088.2.
            
            On or before Oct 3, 2007 this sequence version replaced
            XM_001060434.1, XM_001079210.1, XM_344537.3.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ222594.1, FQ222598.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..339
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q13"
     gene            1..339
                     /gene="Rps28"
                     /note="ribosomal protein S28"
                     /db_xref="GeneID:691531"
                     /db_xref="RGD:621046"
     exon            1..69
                     /gene="Rps28"
                     /inference="alignment:Splign:2.1.0"
     CDS             31..240
                     /gene="Rps28"
                     /note="40S ribosomal protein S28"
                     /codon_start=1
                     /product="small ribosomal subunit protein eS28"
                     /protein_id="NP_001099200.1"
                     /db_xref="GeneID:691531"
                     /db_xref="RGD:621046"
                     /translation="MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIR
                     NVKGPVREGDVLTLLESEREARRLR"
     exon            70..117
                     /gene="Rps28"
                     /inference="alignment:Splign:2.1.0"
     exon            118..251
                     /gene="Rps28"
                     /inference="alignment:Splign:2.1.0"
     exon            252..339
                     /gene="Rps28"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgactcctc tccgctagat ctccgccatc atggacacga gtcgcgtgca gcccatcaag
       61 ctggctaggg taactaaagt gctgggcagg accggatcgc agggacagtg cacgcaggtg
      121 cgagtggaat ttatggatga caccagccgc tctatcatcc gaaacgtcaa aggccctgtt
      181 cgagagggtg atgtgctcac cctgttggag tcagaaagag aagctcggag gttgcgctga
      241 ccttgctgct gggttctgga tatccactcc ttagcccatg gaatgacctg caactgttaa
      301 ataaagcatt tgtattcatt cttgtctaga aattggttt
//
