LOCUS       NM_001276477             698 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribosomal protein S27-like (Rps27l), mRNA.
ACCESSION   NM_001276477 XM_001056747 XM_003750536
VERSION     NM_001276477.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Merrick,B.A., Chang,J.S., Phadke,D.P., Bostrom,M.A., Shah,R.R.,
            Wang,X., Gordon,O. and Wright,G.M.
  TITLE     HAfTs are novel lncRNA transcripts from aflatoxin exposure
  JOURNAL   PLoS One 13 (1), e0190992 (2018)
   PUBMED   29351317
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 698)
  AUTHORS   O'Donohue,M.F., Choesmel,V., Faubladier,M., Fichant,G. and
            Gleizes,P.E.
  TITLE     Functional dichotomy of ribosomal proteins during the synthesis of
            mammalian 40S ribosomal subunits
  JOURNAL   J Cell Biol 190 (5), 853-866 (2010)
   PUBMED   20819938
REFERENCE   4  (bases 1 to 698)
  AUTHORS   Li,J., Tan,J., Zhuang,L., Banerjee,B., Yang,X., Chau,J.F.,
            Lee,P.L., Hande,M.P., Li,B. and Yu,Q.
  TITLE     Ribosomal protein S27-like, a p53-inducible modulator of cell fate
            in response to genotoxic stress
  JOURNAL   Cancer Res 67 (23), 11317-11326 (2007)
   PUBMED   18056458
  REMARK    Erratum:[Cancer Res. 2008 Feb 1;68(3):956]
REFERENCE   5  (bases 1 to 698)
  AUTHORS   He,H. and Sun,Y.
  TITLE     Ribosomal protein S27L is a direct p53 target that regulates
            apoptosis
  JOURNAL   Oncogene 26 (19), 2707-2716 (2007)
   PUBMED   17057733
REFERENCE   6  (bases 1 to 698)
  AUTHORS   Thomas,E.A., Alvarez,C.E. and Sutcliffe,J.G.
  TITLE     Evolutionarily distinct classes of S27 ribosomal proteins with
            differential mRNA expression in rat hypothalamus
  JOURNAL   J Neurochem 74 (6), 2259-2267 (2000)
   PUBMED   10820185
REFERENCE   7  (bases 1 to 698)
  AUTHORS   Chan,Y.L., Suzuki,K., Olvera,J. and Wool,I.G.
  TITLE     Zinc finger-like motifs in rat ribosomal proteins S27 and S29
  JOURNAL   Nucleic Acids Res 21 (3), 649-655 (1993)
   PUBMED   8441676
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1 and CB712651.1.
            
            On or before Feb 17, 2013 this sequence version replaced
            XM_003750536.1, XM_001056747.3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ109437.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMEA5760476
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-34                JAXUCZ010000008.1  76443658-76443691
            35-253              JAXUCZ010000008.1  76445105-76445323
            254-697             CB712651.1         4-447
            698-132783133       JAXUCZ010000008.1  1-132782436
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..698
                     /gene="Rps27l"
                     /gene_synonym="Rps27l1"
                     /note="ribosomal protein S27-like"
                     /db_xref="GeneID:681429"
                     /db_xref="RGD:1595396"
     exon            1..34
                     /gene="Rps27l"
                     /gene_synonym="Rps27l1"
                     /inference="alignment:Splign:2.1.0"
     exon            35..285
                     /gene="Rps27l"
                     /gene_synonym="Rps27l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             280..534
                     /gene="Rps27l"
                     /gene_synonym="Rps27l1"
                     /note="ribosomal protein S27; 40S ribosomal protein
                     S27-like; ribosomal protein S27-like 1"
                     /codon_start=1
                     /product="small ribosomal subunit protein eS27-like"
                     /protein_id="NP_001263406.1"
                     /db_xref="GeneID:681429"
                     /db_xref="RGD:1595396"
                     /translation="MPLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKIT
                     TVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH"
     exon            286..394
                     /gene="Rps27l"
                     /gene_synonym="Rps27l1"
                     /inference="alignment:Splign:2.1.0"
     exon            395..505
                     /gene="Rps27l"
                     /gene_synonym="Rps27l1"
                     /inference="alignment:Splign:2.1.0"
     exon            506..698
                     /gene="Rps27l"
                     /gene_synonym="Rps27l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 attatttgtg gtgtccagag atggtctcat gtgggacttc aagcctggcc ggggtcaagg
       61 gcggagtcgg agcttaagct gtttagacct tccagggtct tggaccggca ttccgggagg
      121 gagtcgtacc acagagacgg cagcctagag cggccactcc cgcccccatt cccctccact
      181 ccgccccgcc gcctctatcc cggaagttgc tgctaggcgc tcgaaagcga gcacctcatc
      241 tcagagatct ggagcggccg cgcttgcgga gctgtcacca tgcctctggc tagagatcta
      301 ttacaccctt ccttggaaga ggaaaagaaa aaacataaga agaaacggct ggttcagagc
      361 ccaaattctt acttcatgga tgtgaaatgt ccaggttgct acaagattac tacagttttc
      421 agccatgctc agacagtggt tctttgtgtg ggttgttcaa ccgtgctgtg ccagcccaca
      481 ggagggaaag ccaggctcac agaaggctgt tcatttagaa gaaagcaaca ctaatcatct
      541 atacaagttc ctgaattcgt gtttttcaca gaaagcctta tcaactttag ttactctacc
      601 aagacaatgt aattattgtt tgattttata aagtctacaa caatgatctc ctattttggt
      661 gtcagttttt caataaagtt ttacttatga acaagttc
//
