LOCUS       NM_053597                366 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribosomal protein S27 (Rps27), mRNA.
ACCESSION   NM_053597
VERSION     NM_053597.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Wang,R., Yoshida,K., Toki,T., Sawada,T., Uechi,T., Okuno,Y.,
            Sato-Otsubo,A., Kudo,K., Kamimaki,I., Kanezaki,R., Shiraishi,Y.,
            Chiba,K., Tanaka,H., Terui,K., Sato,T., Iribe,Y., Ohga,S.,
            Kuramitsu,M., Hamaguchi,I., Ohara,A., Hara,J., Goi,K.,
            Matsubara,K., Koike,K., Ishiguro,A., Okamoto,Y., Watanabe,K.,
            Kanno,H., Kojima,S., Miyano,S., Kenmochi,N., Ogawa,S. and Ito,E.
  TITLE     Loss of function mutations in RPL27 and RPS27 identified by
            whole-exome sequencing in Diamond-Blackfan anaemia
  JOURNAL   Br J Haematol 168 (6), 854-864 (2015)
   PUBMED   25424902
REFERENCE   2  (bases 1 to 366)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   3  (bases 1 to 366)
  AUTHORS   Boyken,J., Gronborg,M., Riedel,D., Urlaub,H., Jahn,R. and Chua,J.J.
  TITLE     Molecular profiling of synaptic vesicle docking sites reveals novel
            proteins but few differences between glutamatergic and GABAergic
            synapses
  JOURNAL   Neuron 78 (2), 285-297 (2013)
   PUBMED   23622064
REFERENCE   4  (bases 1 to 366)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   5  (bases 1 to 366)
  AUTHORS   Bayes,A., van de Lagemaat,L.N., Collins,M.O., Croning,M.D.,
            Whittle,I.R., Choudhary,J.S. and Grant,S.G.
  TITLE     Characterization of the proteome, diseases and evolution of the
            human postsynaptic density
  JOURNAL   Nat Neurosci 14 (1), 19-21 (2011)
   PUBMED   21170055
REFERENCE   6  (bases 1 to 366)
  AUTHORS   Thomas,E.A., Alvarez,C.E. and Sutcliffe,J.G.
  TITLE     Evolutionarily distinct classes of S27 ribosomal proteins with
            differential mRNA expression in rat hypothalamus
  JOURNAL   J Neurochem 74 (6), 2259-2267 (2000)
   PUBMED   10820185
REFERENCE   7  (bases 1 to 366)
  AUTHORS   Vladimirov,S.N., Ivanov,A.V., Karpova,G.G., Musolyamov,A.K.,
            Egorov,T.A., Thiede,B., Wittmann-Liebold,B. and Otto,A.
  TITLE     Characterization of the human small-ribosomal-subunit proteins by
            N-terminal and internal sequencing, and mass spectrometry
  JOURNAL   Eur J Biochem 239 (1), 144-149 (1996)
   PUBMED   8706699
REFERENCE   8  (bases 1 to 366)
  AUTHORS   Fernandez-Pol,J.A., Klos,D.J. and Hamilton,P.D.
  TITLE     A growth factor-inducible gene encodes a novel nuclear protein with
            zinc finger structure
  JOURNAL   J Biol Chem 268 (28), 21198-21204 (1993)
   PUBMED   8407955
REFERENCE   9  (bases 1 to 366)
  AUTHORS   Chan,Y.L., Suzuki,K., Olvera,J. and Wool,I.G.
  TITLE     Zinc finger-like motifs in rat ribosomal proteins S27 and S29
  JOURNAL   Nucleic Acids Res 21 (3), 649-655 (1993)
   PUBMED   8441676
REFERENCE   10 (bases 1 to 366)
  AUTHORS   Collatz,E., Wool,I.G., Lin,A. and Stoffler,G.
  TITLE     The isolation of eukaryotic ribosomal proteins. The purification
            and characterization of the 40 S ribosomal subunit proteins S2, S3,
            S4, S5, S6, S7, S8, S9, S13, S23/S24, S27, and S28
  JOURNAL   J Biol Chem 251 (15), 4666-4672 (1976)
   PUBMED   947902
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC061539.1.
            
            On Apr 14, 2007 this sequence version replaced NM_053597.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC061539.1, FQ133074.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00155329, SAMD00155330
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-366               BC061539.1         5-370
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..366
                     /gene="Rps27"
                     /note="ribosomal protein S27"
                     /db_xref="GeneID:94266"
                     /db_xref="RGD:621045"
     exon            1..39
                     /gene="Rps27"
                     /inference="alignment:Splign:2.1.0"
     CDS             34..288
                     /gene="Rps27"
                     /note="40S ribosomal protein S27"
                     /codon_start=1
                     /product="small ribosomal subunit protein eS27"
                     /protein_id="NP_446049.1"
                     /db_xref="GeneID:94266"
                     /db_xref="RGD:621045"
                     /translation="MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKIT
                     TVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH"
     exon            40..148
                     /gene="Rps27"
                     /inference="alignment:Splign:2.1.0"
     exon            149..259
                     /gene="Rps27"
                     /inference="alignment:Splign:2.1.0"
     exon            260..343
                     /gene="Rps27"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctttccggc ggtgacgacc tccctacgag aacatgcctc tcgcaaagga tctccttcat
       61 ccttctccag aagaggagaa gaggaaacac aagaaaaagc gcctggtgca gagccccaat
      121 tcctacttta tggatgtgaa atgcccagga tgctataaaa tcaccacggt ctttagccat
      181 gcacaaacgg tagtcttgtg tgttggctgc tccactgtac tctgtcagcc tacaggtgga
      241 aaagcaaggc tgacagaagg atgctccttc aggaggaagc agcactgaaa gcccctgatt
      301 caagatgagt gggaacgttc ccaataaaca cattttggat ataaaaaaaa aaaaaaaaaa
      361 aaaaaa
//
