LOCUS       NM_078617                539 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribosomal protein S23 (Rps23), mRNA.
ACCESSION   NM_078617
VERSION     NM_078617.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Paolini,N.A., Attwood,M., Sondalle,S.B., Vieira,C.M.D.S., van
            Adrichem,A.M., di Summa,F.M., O'Donohue,M.F., Gleizes,P.E.,
            Rachuri,S., Briggs,J.W., Fischer,R., Ratcliffe,P.J.,
            Wlodarski,M.W., Houtkooper,R.H., von Lindern,M., Kuijpers,T.W.,
            Dinman,J.D., Baserga,S.J., Cockman,M.E. and MacInnes,A.W.
  TITLE     A Ribosomopathy Reveals Decoding Defective Ribosomes Driving Human
            Dysmorphism
  JOURNAL   Am J Hum Genet 100 (3), 506-522 (2017)
   PUBMED   28257692
REFERENCE   2  (bases 1 to 539)
  AUTHORS   Topalidou,I., Cattin-Ortola,J., Pappas,A.L., Cooper,K.,
            Merrihew,G.E., MacCoss,M.J. and Ailion,M.
  TITLE     The EARP Complex and Its Interactor EIPR-1 Are Required for Cargo
            Sorting to Dense-Core Vesicles
  JOURNAL   PLoS Genet 12 (5), e1006074 (2016)
   PUBMED   27191843
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 539)
  AUTHORS   Behrmann,E., Loerke,J., Budkevich,T.V., Yamamoto,K., Schmidt,A.,
            Penczek,P.A., Vos,M.R., Burger,J., Mielke,T., Scheerer,P. and
            Spahn,C.M.
  TITLE     Structural snapshots of actively translating human ribosomes
  JOURNAL   Cell 161 (4), 845-857 (2015)
   PUBMED   25957688
REFERENCE   4  (bases 1 to 539)
  AUTHORS   Voorhees,R.M., Fernandez,I.S., Scheres,S.H. and Hegde,R.S.
  TITLE     Structure of the mammalian ribosome-Sec61 complex to 3.4 A
            resolution
  JOURNAL   Cell 157 (7), 1632-1643 (2014)
   PUBMED   24930395
REFERENCE   5  (bases 1 to 539)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   6  (bases 1 to 539)
  AUTHORS   Trinidad,J.C., Specht,C.G., Thalhammer,A., Schoepfer,R. and
            Burlingame,A.L.
  TITLE     Comprehensive identification of phosphorylation sites in
            postsynaptic density preparations
  JOURNAL   Mol Cell Proteomics 5 (5), 914-922 (2006)
   PUBMED   16452087
REFERENCE   7  (bases 1 to 539)
  AUTHORS   Yu,Y., Ji,H., Doudna,J.A. and Leary,J.A.
  TITLE     Mass spectrometric analysis of the human 40S ribosomal subunit:
            native and HCV IRES-bound complexes
  JOURNAL   Protein Sci 14 (6), 1438-1446 (2005)
   PUBMED   15883184
REFERENCE   8  (bases 1 to 539)
  AUTHORS   Vladimirov,S.N., Ivanov,A.V., Karpova,G.G., Musolyamov,A.K.,
            Egorov,T.A., Thiede,B., Wittmann-Liebold,B. and Otto,A.
  TITLE     Characterization of the human small-ribosomal-subunit proteins by
            N-terminal and internal sequencing, and mass spectrometry
  JOURNAL   Eur J Biochem 239 (1), 144-149 (1996)
   PUBMED   8706699
REFERENCE   9  (bases 1 to 539)
  AUTHORS   Kitaoka,Y., Olvera,J. and Wool,I.G.
  TITLE     The primary structure of rat ribosomal protein S23
  JOURNAL   Biochem Biophys Res Commun 202 (1), 314-320 (1994)
   PUBMED   8037726
REFERENCE   10 (bases 1 to 539)
  AUTHORS   Lutsch,G., Noll,F., Theise,H., Enzmann,G. and Bielka,H.
  TITLE     Localization of proteins S1, S2, S16 and S23 on the surface of
            small subunits of rat liver ribosomes by immune electron microscopy
  JOURNAL   Mol Gen Genet 176 (2), 281-291 (1979)
   PUBMED   294497
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC058134.1.
            
            On Aug 30, 2012 this sequence version replaced NM_078617.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC058134.1, FQ228931.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-539               BC058134.1         5-543
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q12"
     gene            1..539
                     /gene="Rps23"
                     /note="ribosomal protein S23"
                     /db_xref="GeneID:124323"
                     /db_xref="RGD:621039"
     exon            1..43
                     /gene="Rps23"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..471
                     /gene="Rps23"
                     /note="40S ribosomal protein S23"
                     /codon_start=1
                     /product="small ribosomal subunit protein uS12"
                     /protein_id="NP_511172.1"
                     /db_xref="GeneID:124323"
                     /db_xref="RGD:621039"
                     /translation="MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGA
                     SHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV
                     AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS"
     exon            44..203
                     /gene="Rps23"
                     /inference="alignment:Splign:2.1.0"
     exon            204..324
                     /gene="Rps23"
                     /inference="alignment:Splign:2.1.0"
     exon            325..510
                     /gene="Rps23"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tctcttctct ctttctctcg ggcccgtggc gccggcaaga tgggtaagtg tcgtggtctc
       61 cgtactgccc ggaagctccg cagtcaccga cgggaccaga agtggcatga taaacagtac
      121 aagaaagccc acttgggcac agccctgaag gccaatccgt ttgggggtgc ctctcacgca
      181 aagggaattg tactggaaaa agtaggggtt gaagccaaac agccaaattc tgccatccgg
      241 aagtgtgtca gggtgcagct cattaagaac ggcaagaaga tcacagcatt cgtgcccaat
      301 gacggttgct tgaacttcat tgaggaaaat gatgaagttc tggttgctgg atttggtcgc
      361 aaaggccatg ccgtgggtga tattcctgga gtccgcttta aggtggttaa agtagccaat
      421 gtgtctcttt tggctctgta caaaggcaag aaggaaagac caagatcata aaattttgac
      481 aatggaaaca gaataataaa ttttcatatc aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//
