LOCUS       NM_001007603             722 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ribosomal protein S20 (Rps20), mRNA.
ACCESSION   NM_001007603 XM_233622
VERSION     NM_001007603.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 722)
  AUTHORS   Voorhees,R.M., Fernandez,I.S., Scheres,S.H. and Hegde,R.S.
  TITLE     Structure of the mammalian ribosome-Sec61 complex to 3.4 A
            resolution
  JOURNAL   Cell 157 (7), 1632-1643 (2014)
   PUBMED   24930395
REFERENCE   2  (bases 1 to 722)
  AUTHORS   Zanivan,S., Maione,F., Hein,M.Y., Hernandez-Fernaud,J.R.,
            Ostasiewicz,P., Giraudo,E. and Mann,M.
  TITLE     SILAC-based proteomics of human primary endothelial cell
            morphogenesis unveils tumor angiogenic markers
  JOURNAL   Mol Cell Proteomics 12 (12), 3599-3611 (2013)
   PUBMED   23979707
REFERENCE   3  (bases 1 to 722)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   4  (bases 1 to 722)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   5  (bases 1 to 722)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   6  (bases 1 to 722)
  AUTHORS   Trinidad,J.C., Specht,C.G., Thalhammer,A., Schoepfer,R. and
            Burlingame,A.L.
  TITLE     Comprehensive identification of phosphorylation sites in
            postsynaptic density preparations
  JOURNAL   Mol Cell Proteomics 5 (5), 914-922 (2006)
   PUBMED   16452087
REFERENCE   7  (bases 1 to 722)
  AUTHORS   Yu,Y., Ji,H., Doudna,J.A. and Leary,J.A.
  TITLE     Mass spectrometric analysis of the human 40S ribosomal subunit:
            native and HCV IRES-bound complexes
  JOURNAL   Protein Sci 14 (6), 1438-1446 (2005)
   PUBMED   15883184
REFERENCE   8  (bases 1 to 722)
  AUTHORS   Vladimirov,S.N., Ivanov,A.V., Karpova,G.G., Musolyamov,A.K.,
            Egorov,T.A., Thiede,B., Wittmann-Liebold,B. and Otto,A.
  TITLE     Characterization of the human small-ribosomal-subunit proteins by
            N-terminal and internal sequencing, and mass spectrometry
  JOURNAL   Eur J Biochem 239 (1), 144-149 (1996)
   PUBMED   8706699
REFERENCE   9  (bases 1 to 722)
  AUTHORS   Chan,Y.L. and Wool,I.G.
  TITLE     The primary structure of rat ribosomal protein S20
  JOURNAL   Biochim Biophys Acta 1049 (1), 93-95 (1990)
   PUBMED   2357470
REFERENCE   10 (bases 1 to 722)
  AUTHORS   Collatz,E., Ulbrich,N., Tsurugi,K., Lightfoot,H.N., MacKinlay,W.,
            Lin,A. and Wool,I.G.
  TITLE     Isolation of eukaryotic ribosomal proteins. Purification and
            characterization of the 40 S ribosomal subunit proteins Sa, Sc,
            S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18,
            S19, S20, S21, S26, S27', and S29
  JOURNAL   J Biol Chem 252 (24), 9071-9080 (1977)
   PUBMED   925037
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Mar 6, 2022 this sequence version replaced NM_001007603.3.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ222926.1, FQ222128.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840110, SAMN12840111
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-117               JAXUCZ010000005.1  21617952-21618068   c
            118-217             JAXUCZ010000005.1  21617663-21617762   c
            218-291             JAXUCZ010000005.1  21617393-21617466   c
            292-722             JAXUCZ010000005.1  21616687-21617117   c
FEATURES             Location/Qualifiers
     source          1..722
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q12"
     gene            1..722
                     /gene="Rps20"
                     /note="ribosomal protein S20"
                     /db_xref="GeneID:122772"
                     /db_xref="RGD:621037"
     exon            1..117
                     /gene="Rps20"
                     /inference="alignment:Splign:2.1.0"
     CDS             115..474
                     /gene="Rps20"
                     /note="40S ribosomal protein S20"
                     /codon_start=1
                     /product="small ribosomal subunit protein uS10"
                     /protein_id="NP_001007604.1"
                     /db_xref="GeneID:122772"
                     /db_xref="RGD:621037"
                     /translation="MAFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAK
                     EKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQIT
                     SISIEPGVEVEVTIADA"
     exon            118..217
                     /gene="Rps20"
                     /inference="alignment:Splign:2.1.0"
     exon            218..291
                     /gene="Rps20"
                     /inference="alignment:Splign:2.1.0"
     exon            292..722
                     /gene="Rps20"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctttccgag acctgtggtg cgtgctgtgg agccttgtca agtctgctct gtcctgactc
       61 accgctgttc gctcctgctg aggaacaagt cggtcaggaa gctacgcctc agccatggca
      121 tttaaagata ccgggaagac tcccgtggag cccgaagtgg cgattcaccg gattcgaatc
      181 acgctcacca gccgcaacgt gaagtcgctg gaaaaggttt gtgcggactt gatcagaggc
      241 gcaaaggaga agaatctgaa agtgaaagga ccagtgcgca tgcctaccaa gacactgaga
      301 atcactacca gaaaaacccc ttgcggtgaa ggttccaaga cgtgggatcg tttccagatg
      361 agaatccaca agcgactcat tgacttacac agtccttcag agattgttaa gcagattact
      421 tccatcagta ttgagcctgg agtggaggtt gaagtcacca ttgcagatgc ctaagtcaac
      481 tgtttaaata aattgactta attgttaagt tttgctggct tttattcagg ttttttagtg
      541 ttcatgagtg taaatgaatg tgtgtcacac gggtgccagt agatgttcct ttgaaccacc
      601 atgtagatgc tggagatcca acctgcatcc tcagaacaag ttccttaacc accgagcaag
      661 tactgaagca ttaaactgct tttagaaata aaggtgtggc aacagactgg tcaagtgaaa
      721 aa
//
