LOCUS       NM_031838                952 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribosomal protein S2 (Rps2), mRNA.
ACCESSION   NM_031838
VERSION     NM_031838.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 952)
  AUTHORS   Guo,Z., Neilson,L.J., Zhong,H., Murray,P.S., Zanivan,S. and
            Zaidel-Bar,R.
  TITLE     E-cadherin interactome complexity and robustness resolved by
            quantitative proteomics
  JOURNAL   Sci Signal 7 (354), rs7 (2014)
   PUBMED   25468996
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 952)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   3  (bases 1 to 952)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   4  (bases 1 to 952)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   5  (bases 1 to 952)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   6  (bases 1 to 952)
  AUTHORS   Haviryaji,K.S., Srinivas,R., Suryanarayana,T. and Vemuri,M.C.
  TITLE     Effect of ethanol on hepatic ribosomal proteins and mRNA
  JOURNAL   Mol Cell Biochem 115 (2), 143-147 (1992)
   PUBMED   1448059
REFERENCE   7  (bases 1 to 952)
  AUTHORS   Suzuki,K., Olvera,J. and Wool,I.G.
  TITLE     Primary structure of rat ribosomal protein S2. A ribosomal protein
            with arginine-glycine tandem repeats and RGGF motifs that are
            associated with nucleolar localization and binding to ribonucleic
            acids
  JOURNAL   J Biol Chem 266 (30), 20007-20010 (1991)
   PUBMED   1939063
REFERENCE   8  (bases 1 to 952)
  AUTHORS   Lutsch,G., Stahl,J., Kargel,H.J., Noll,F. and Bielka,H.
  TITLE     Immunoelectron microscopic studies on the location of ribosomal
            proteins on the surface of the 40S ribosomal subunit from rat liver
  JOURNAL   Eur J Cell Biol 51 (1), 140-150 (1990)
   PUBMED   2328735
REFERENCE   9  (bases 1 to 952)
  AUTHORS   Noll,F., Bommer,U.A., Lutsch,G., Theise,H. and Bielka,H.
  TITLE     Localization of rat liver ribosomal protein S2 and its involvement
            in initiation factor eIF-2 binding to the 40 S ribosomal subunit
  JOURNAL   FEBS Lett 87 (1), 129-131 (1978)
   PUBMED   344063
REFERENCE   10 (bases 1 to 952)
  AUTHORS   Collatz,E., Wool,I.G., Lin,A. and Stoffler,G.
  TITLE     The isolation of eukaryotic ribosomal proteins. The purification
            and characterization of the 40 S ribosomal subunit proteins S2, S3,
            S4, S5, S6, S7, S8, S9, S13, S23/S24, S27, and S28
  JOURNAL   J Biol Chem 251 (15), 4666-4672 (1976)
   PUBMED   947902
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CD372915.1,
            CB324420.1 and AI713815.1.
            
            On Oct 26, 2005 this sequence version replaced NM_031838.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ210378.1, FQ213061.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-202               CD372915.1         1-202
            203-640             CB324420.1         222-659
            641-952             AI713815.1         1-312               c
FEATURES             Location/Qualifiers
     source          1..952
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..952
                     /gene="Rps2"
                     /gene_synonym="Rps2r1"
                     /note="ribosomal protein S2"
                     /db_xref="GeneID:83789"
                     /db_xref="RGD:619887"
     exon            1..11
                     /gene="Rps2"
                     /gene_synonym="Rps2r1"
                     /inference="alignment:Splign:2.1.0"
     exon            12..191
                     /gene="Rps2"
                     /gene_synonym="Rps2r1"
                     /inference="alignment:Splign:2.1.0"
     CDS             15..896
                     /gene="Rps2"
                     /gene_synonym="Rps2r1"
                     /note="40S ribosomal protein S2"
                     /codon_start=1
                     /product="small ribosomal subunit protein uS5"
                     /protein_id="NP_114026.3"
                     /db_xref="GeneID:83789"
                     /db_xref="RGD:619887"
                     /translation="MADDAGAAGGPGGPGGPGLGGRGGFRGGFGSGLRGRGRGRGRGR
                     GRGRGARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASL
                     KDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKL
                     SIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAG
                     IDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKT
                     HTRVSVQRTQAPAVATT"
     exon            192..281
                     /gene="Rps2"
                     /gene_synonym="Rps2r1"
                     /inference="alignment:Splign:2.1.0"
     exon            282..389
                     /gene="Rps2"
                     /gene_synonym="Rps2r1"
                     /inference="alignment:Splign:2.1.0"
     exon            390..723
                     /gene="Rps2"
                     /gene_synonym="Rps2r1"
                     /inference="alignment:Splign:2.1.0"
     exon            724..815
                     /gene="Rps2"
                     /gene_synonym="Rps2r1"
                     /inference="alignment:Splign:2.1.0"
     exon            816..937
                     /gene="Rps2"
                     /gene_synonym="Rps2r1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgggaaaaca ccaaatggcg gatgacgccg gtgcagcggg agggcccgga ggacccgggg
       61 gcccaggatt aggaggccgc ggcggcttcc gcggaggatt cggcagcggc cttaggggcc
      121 gcggtcgtgg ccgaggccgt ggccgcggtc gaggccgcgg ggctcgtgga ggtaaagctg
      181 aagacaagga gtggatcccc gttaccaagc tgggccgcct ggttaaggac atgaagatca
      241 agtccttgga ggagatctac ctgttctccc tgcccattaa ggagtctgag attattgact
      301 ttttcctggg tgcatctcta aaggatgaag ttctgaaaat catgccagtg cagaagcaga
      361 ctcgggctgg ccagcggacc aggttcaagg cctttgtcgc tattggggac tacaatggcc
      421 acgttggtct tggtgttaag tgctccaagg aggtagccac tgccatccga ggggccatca
      481 tcctggccaa gctttcgatc gtcccagtgc ggagaggcta ctgggggaac aagattggca
      541 agccccacac tgtgccatgc aaggtgacag gccgctgtgg ctctgtgctg gttcgtctca
      601 tccctgcccc cagaggcact ggcattgtct ctgctcctgt gcccaagaag ctactgatga
      661 tggccggtat agatgactgc tacacttcag ccaggggctg cactgccacc ctgggcaact
      721 ttgccaaggc cacctttgat gccatctcca agacctacag ctacctgacc cctgacctct
      781 ggaaagagac tgtgttcacc aagtctcctt atcaggaatt cactgaccat cttgtgaaaa
      841 cccacaccag agtctctgtt cagaggaccc aggctccagc tgtggctacc acataagggt
      901 ttttatacaa gaaaaataaa tgaattaagt ctgttaaaaa aaaaaaaaaa aa
//
