LOCUS       NM_213557                548 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribosomal protein S18 (Rps18), mRNA.
ACCESSION   NM_213557 XM_215328
VERSION     NM_213557.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 548)
  AUTHORS   Henras,A.K., Plisson-Chastang,C., O'Donohue,M.F., Chakraborty,A.
            and Gleizes,P.E.
  TITLE     An overview of pre-ribosomal RNA processing in eukaryotes
  JOURNAL   Wiley Interdiscip Rev RNA 6 (2), 225-242 (2015)
   PUBMED   25346433
  REMARK    Review article
REFERENCE   2  (bases 1 to 548)
  AUTHORS   Milochau,A., Lagree,V., Benassy,M.N., Chaignepain,S., Papin,J.,
            Garcia-Arcos,I., Lajoix,A., Monterrat,C., Coudert,L.,
            Schmitter,J.M., Ochoa,B. and Lang,J.
  TITLE     Synaptotagmin 11 interacts with components of the RNA-induced
            silencing complex RISC in clonal pancreatic beta-cells
  JOURNAL   FEBS Lett 588 (14), 2217-2222 (2014)
   PUBMED   24882364
REFERENCE   3  (bases 1 to 548)
  AUTHORS   Voorhees,R.M., Fernandez,I.S., Scheres,S.H. and Hegde,R.S.
  TITLE     Structure of the mammalian ribosome-Sec61 complex to 3.4 A
            resolution
  JOURNAL   Cell 157 (7), 1632-1643 (2014)
   PUBMED   24930395
REFERENCE   4  (bases 1 to 548)
  AUTHORS   Li,B., Matter,E.K., Hoppert,H.T., Grayson,B.E., Seeley,R.J. and
            Sandoval,D.A.
  TITLE     Identification of optimal reference genes for RT-qPCR in the rat
            hypothalamus and intestine for the study of obesity
  JOURNAL   Int J Obes (Lond) 38 (2), 192-197 (2014)
   PUBMED   23736358
  REMARK    GeneRIF: Our study demonstrates that gene expression levels of
            reference genes commonly used in obesity-related studies, such as
            ACTB or RPS18, are altered by changes in acute or chronic energy
            status.
REFERENCE   5  (bases 1 to 548)
  AUTHORS   Zanivan,S., Maione,F., Hein,M.Y., Hernandez-Fernaud,J.R.,
            Ostasiewicz,P., Giraudo,E. and Mann,M.
  TITLE     SILAC-based proteomics of human primary endothelial cell
            morphogenesis unveils tumor angiogenic markers
  JOURNAL   Mol Cell Proteomics 12 (12), 3599-3611 (2013)
   PUBMED   23979707
REFERENCE   6  (bases 1 to 548)
  AUTHORS   Helou,K., Yan,Q., Yuan,X.J., Kunz,H.W., Levan,G. and Gill,T.J. 3rd.
  TITLE     Cytogenetic localization of the growth and reproduction complex
            (Grc) in the rat and in the mouse and its position in relation to
            RT1.EC and other loci in the rat MHC
  JOURNAL   Hereditas 130 (2), 105-109 (1999)
   PUBMED   10479997
REFERENCE   7  (bases 1 to 548)
  AUTHORS   Vladimirov,S.N., Ivanov,A.V., Karpova,G.G., Musolyamov,A.K.,
            Egorov,T.A., Thiede,B., Wittmann-Liebold,B. and Otto,A.
  TITLE     Characterization of the human small-ribosomal-subunit proteins by
            N-terminal and internal sequencing, and mass spectrometry
  JOURNAL   Eur J Biochem 239 (1), 144-149 (1996)
   PUBMED   8706699
REFERENCE   8  (bases 1 to 548)
  AUTHORS   Castelli,P.G. and Ferrari,C.
  TITLE     [The Brooks-Graner technique in the correction of inveterate mallet
            finger in sportsmen]
  JOURNAL   Minerva Med 83 (12 Suppl 1), 61-64 (1992)
   PUBMED   1300474
REFERENCE   9  (bases 1 to 548)
  AUTHORS   Chan,Y.L., Paz,V. and Wool,I.G.
  TITLE     The primary structure of rat ribosomal protein S18
  JOURNAL   Biochem Biophys Res Commun 178 (3), 1212-1218 (1991)
   PUBMED   1872840
REFERENCE   10 (bases 1 to 548)
  AUTHORS   Collatz,E., Ulbrich,N., Tsurugi,K., Lightfoot,H.N., MacKinlay,W.,
            Lin,A. and Wool,I.G.
  TITLE     Isolation of eukaryotic ribosomal proteins. Purification and
            characterization of the 40 S ribosomal subunit proteins Sa, Sc,
            S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18,
            S19, S20, S21, S26, S27', and S29
  JOURNAL   J Biol Chem 252 (24), 9071-9080 (1977)
   PUBMED   925037
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX883042.1.
            
            On Aug 30, 2004 this sequence version replaced XM_215328.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ139220.1, FQ223169.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..548
                     /gene="Rps18"
                     /gene_synonym="Ke3"
                     /note="ribosomal protein S18"
                     /db_xref="GeneID:294282"
                     /db_xref="RGD:3595"
     exon            1..48
                     /gene="Rps18"
                     /gene_synonym="Ke3"
                     /inference="alignment:Splign:2.1.0"
     CDS             46..504
                     /gene="Rps18"
                     /gene_synonym="Ke3"
                     /note="40S ribosomal protein S18"
                     /codon_start=1
                     /product="small ribosomal subunit protein uS13"
                     /protein_id="NP_998722.1"
                     /db_xref="GeneID:294282"
                     /db_xref="RGD:3595"
                     /translation="MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVV
                     LRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANG
                     LDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK"
     exon            49..147
                     /gene="Rps18"
                     /gene_synonym="Ke3"
                     /inference="alignment:Splign:2.1.0"
     exon            148..336
                     /gene="Rps18"
                     /gene_synonym="Ke3"
                     /inference="alignment:Splign:2.1.0"
     exon            337..428
                     /gene="Rps18"
                     /gene_synonym="Ke3"
                     /inference="alignment:Splign:2.1.0"
     exon            429..548
                     /gene="Rps18"
                     /gene_synonym="Ke3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctctcttcca caggaggcct acacgccgcc gcttgtgccg ccgccatgtc cctagtgatc
       61 cccgagaagt ttcagcacat cctgcgagta ctcaacacca acatcgatgg gcggcggaaa
      121 atagccttcg ctatcactgc cattaagggt gtggggcgga gatacgctca tgtggtgttg
      181 aggaaagcag acattgacct caccaagagg gctggggagc tcacggagga cgaggtggag
      241 cgtgtgatca ccatcatgca gaacccacga caatacaaga tccctgactg gttcttgaac
      301 agacagaagg acgtgaagga tgggaagtat agccaggttc tggccaacgg tctagacaac
      361 aagctgcgtg aggacctgga gcggctgaag aaaatccgag cccatagagg gctgcgccac
      421 ttttggggcc ttcgtgtccg gggtcagcac accaagacca ctggccgcag gggccgtact
      481 gtgggtgtgt ccaagaagaa atgagtcttt gggcctttgc tgttaataaa tagtttatat
      541 accaatga
//
