LOCUS       NM_001169146             819 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribosomal protein S16 (Rps16), mRNA.
ACCESSION   NM_001169146 XM_001078234 XM_341815
VERSION     NM_001169146.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 819)
  AUTHORS   Voorhees,R.M., Fernandez,I.S., Scheres,S.H. and Hegde,R.S.
  TITLE     Structure of the mammalian ribosome-Sec61 complex to 3.4 A
            resolution
  JOURNAL   Cell 157 (7), 1632-1643 (2014)
   PUBMED   24930395
REFERENCE   2  (bases 1 to 819)
  AUTHORS   Zanivan,S., Maione,F., Hein,M.Y., Hernandez-Fernaud,J.R.,
            Ostasiewicz,P., Giraudo,E. and Mann,M.
  TITLE     SILAC-based proteomics of human primary endothelial cell
            morphogenesis unveils tumor angiogenic markers
  JOURNAL   Mol Cell Proteomics 12 (12), 3599-3611 (2013)
   PUBMED   23979707
REFERENCE   3  (bases 1 to 819)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   4  (bases 1 to 819)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   5  (bases 1 to 819)
  AUTHORS   Kuo,J.C., Han,X., Hsiao,C.T., Yates,J.R. 3rd and Waterman,C.M.
  TITLE     Analysis of the myosin-II-responsive focal adhesion proteome
            reveals a role for beta-Pix in negative regulation of focal
            adhesion maturation
  JOURNAL   Nat Cell Biol 13 (4), 383-393 (2011)
   PUBMED   21423176
REFERENCE   6  (bases 1 to 819)
  AUTHORS   Batra,S.K., Metzgar,R.S. and Hollingsworth,M.A.
  TITLE     Molecular cloning and sequence analysis of the human ribosomal
            protein S16
  JOURNAL   J Biol Chem 266 (11), 6830-6833 (1991)
   PUBMED   2016298
REFERENCE   7  (bases 1 to 819)
  AUTHORS   Chan,Y.L., Paz,V., Olvera,J. and Wool,I.G.
  TITLE     The primary structure of rat ribosomal protein S16
  JOURNAL   FEBS Lett 263 (1), 85-88 (1990)
   PUBMED   2332055
REFERENCE   8  (bases 1 to 819)
  AUTHORS   Lutsch,G., Stahl,J., Kargel,H.J., Noll,F. and Bielka,H.
  TITLE     Immunoelectron microscopic studies on the location of ribosomal
            proteins on the surface of the 40S ribosomal subunit from rat liver
  JOURNAL   Eur J Cell Biol 51 (1), 140-150 (1990)
   PUBMED   2328735
REFERENCE   9  (bases 1 to 819)
  AUTHORS   Faliks,D. and Meyuhas,O.
  TITLE     Coordinate regulation of ribosomal protein mRNA level in
            regenerating rat liver. Study with the corresponding mouse cloned
            cDNAs
  JOURNAL   Nucleic Acids Res 10 (3), 789-801 (1982)
   PUBMED   6121318
REFERENCE   10 (bases 1 to 819)
  AUTHORS   Collatz,E., Ulbrich,N., Tsurugi,K., Lightfoot,H.N., MacKinlay,W.,
            Lin,A. and Wool,I.G.
  TITLE     Isolation of eukaryotic ribosomal proteins. Purification and
            characterization of the 40 S ribosomal subunit proteins Sa, Sc,
            S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18,
            S19, S20, S21, S26, S27', and S29
  JOURNAL   J Biol Chem 252 (24), 9071-9080 (1977)
   PUBMED   925037
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before Oct 29, 2010 this sequence version replaced
            XM_341815.4, XM_001078234.2.
            
            Sequence Note: The RefSeq transcript was derived from the reference
            genome assembly. The genomic coordinates were determined from
            alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CB315085.1, BC159438.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-120               JAXUCZ010000001.1  92770658-92770777
            121-222             JAXUCZ010000001.1  92770917-92771018
            223-319             JAXUCZ010000001.1  92772825-92772921
            320-367             JAXUCZ010000001.1  92773011-92773058
            368-819             JAXUCZ010000001.1  92773152-92773603
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..819
                     /gene="Rps16"
                     /note="ribosomal protein S16"
                     /db_xref="GeneID:140655"
                     /db_xref="RGD:621031"
     exon            1..120
                     /gene="Rps16"
                     /inference="alignment:Splign:2.1.0"
     CDS             73..513
                     /gene="Rps16"
                     /note="40S ribosomal protein S16"
                     /codon_start=1
                     /product="small ribosomal subunit protein uS9"
                     /protein_id="NP_001162617.1"
                     /db_xref="GeneID:140655"
                     /db_xref="RGD:621031"
                     /translation="MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEP
                     RTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDE
                     ASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR"
     exon            121..222
                     /gene="Rps16"
                     /inference="alignment:Splign:2.1.0"
     exon            223..319
                     /gene="Rps16"
                     /inference="alignment:Splign:2.1.0"
     exon            320..367
                     /gene="Rps16"
                     /inference="alignment:Splign:2.1.0"
     exon            368..819
                     /gene="Rps16"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggggtggccc caagctttcc ttttccggtg gcggcgcggc gcggtgagga gctcgtgttc
       61 atacttgtag ctatgccgtc caagggtccg ctgcagtccg ttcaagtctt cggacgcaag
      121 aaaacagcca cagctgtggc ccactgcaaa cgaggaaatg ggctcatcaa ggtgaatgga
      181 cgtcccctgg agatgatcga gccgcgcacg ctgcagtaca agttactgga gcctgttctg
      241 cttctgggca aggagagatt tgctggtgtg gatatccggg tccgtgtgaa gggtggtggt
      301 catgtggccc aaatttatgc tatccggcag tctatctcaa aagctctggt ggcttattac
      361 caaaaatatg tggatgaagc ctctaagaag gagatcaaag atatcctcat ccagtacgat
      421 cggaccctgc ttgtagctga cccccgtcgc tgcgaatcca agaagtttgg cggtcccggt
      481 gcccgtgccc ggtaccagaa atcctaccga taagccagtc tcaaggatca gggtttacct
      541 ttgtaataaa catcctggga ctttatattt ctgtattgtt gtctctcttt gtagtgtttg
      601 gttagacaat gcaagagata cctttaataa gtggctgtgg ggactggagt gatggctgcc
      661 ttcccacagc atttgagctc tgacctggtt tctctccccc cagctatcct ggaactcact
      721 gtatagacca ggctggcctt aaacccaaga gctgtgcctg cttctgcttc accagtgcta
      781 ggattaaaga ggtgtggact accacattca gcgacttaa
//
