LOCUS       NM_130432                549 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribosomal protein S13 (Rps13), mRNA.
ACCESSION   NM_130432 XM_341910
VERSION     NM_130432.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Zanivan,S., Maione,F., Hein,M.Y., Hernandez-Fernaud,J.R.,
            Ostasiewicz,P., Giraudo,E. and Mann,M.
  TITLE     SILAC-based proteomics of human primary endothelial cell
            morphogenesis unveils tumor angiogenic markers
  JOURNAL   Mol Cell Proteomics 12 (12), 3599-3611 (2013)
   PUBMED   23979707
REFERENCE   2  (bases 1 to 549)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   3  (bases 1 to 549)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   4  (bases 1 to 549)
  AUTHORS   Kuo,J.C., Han,X., Hsiao,C.T., Yates,J.R. 3rd and Waterman,C.M.
  TITLE     Analysis of the myosin-II-responsive focal adhesion proteome
            reveals a role for beta-Pix in negative regulation of focal
            adhesion maturation
  JOURNAL   Nat Cell Biol 13 (4), 383-393 (2011)
   PUBMED   21423176
REFERENCE   5  (bases 1 to 549)
  AUTHORS   Bayes,A., van de Lagemaat,L.N., Collins,M.O., Croning,M.D.,
            Whittle,I.R., Choudhary,J.S. and Grant,S.G.
  TITLE     Characterization of the proteome, diseases and evolution of the
            human postsynaptic density
  JOURNAL   Nat Neurosci 14 (1), 19-21 (2011)
   PUBMED   21170055
REFERENCE   6  (bases 1 to 549)
  AUTHORS   Lee,N.H., Weinstock,K.G., Kirkness,E.F., Earle-Hughes,J.A.,
            Fuldner,R.A., Marmaros,S., Glodek,A., Gocayne,J.D., Adams,M.D.,
            Kerlavage,A.R. et al.
  TITLE     Comparative expressed-sequence-tag analysis of differential gene
            expression profiles in PC-12 cells before and after nerve growth
            factor treatment
  JOURNAL   Proc Natl Acad Sci U S A 92 (18), 8303-8307 (1995)
   PUBMED   7667285
REFERENCE   7  (bases 1 to 549)
  AUTHORS   Suzuki,K., Olvera,J. and Wool,I.G.
  TITLE     The primary structure of rat ribosomal protein S13
  JOURNAL   Biochem Biophys Res Commun 171 (2), 519-524 (1990)
   PUBMED   2403345
REFERENCE   8  (bases 1 to 549)
  AUTHORS   Lutsch,G., Stahl,J., Kargel,H.J., Noll,F. and Bielka,H.
  TITLE     Immunoelectron microscopic studies on the location of ribosomal
            proteins on the surface of the 40S ribosomal subunit from rat liver
  JOURNAL   Eur J Cell Biol 51 (1), 140-150 (1990)
   PUBMED   2328735
REFERENCE   9  (bases 1 to 549)
  AUTHORS   Todokoro,K., Ulbrich,N., Chan,Y.L. and Wool,I.G.
  TITLE     Characterization of the binding of rat liver ribosomal proteins L6,
            L8, L19, S9, and S13 to 5.8 S ribosomal ribonucleic acid
  JOURNAL   J Biol Chem 256 (14), 7207-7212 (1981)
   PUBMED   7251593
REFERENCE   10 (bases 1 to 549)
  AUTHORS   Collatz,E., Wool,I.G., Lin,A. and Stoffler,G.
  TITLE     The isolation of eukaryotic ribosomal proteins. The purification
            and characterization of the 40 S ribosomal subunit proteins S2, S3,
            S4, S5, S6, S7, S8, S9, S13, S23/S24, S27, and S28
  JOURNAL   J Biol Chem 251 (15), 4666-4672 (1976)
   PUBMED   947902
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AA686236.1 and BC084724.1.
            
            On May 25, 2007 this sequence version replaced NM_130432.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ224170.1, FQ222187.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMEA5760396
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-24                AA686236.1         3-26
            25-549              BC084724.1         1-525
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q35"
     gene            1..549
                     /gene="Rps13"
                     /note="ribosomal protein S13"
                     /db_xref="GeneID:161477"
                     /db_xref="RGD:621027"
     exon            1..54
                     /gene="Rps13"
                     /inference="alignment:Splign:2.1.0"
     CDS             32..487
                     /gene="Rps13"
                     /EC_number="3.6.5.3"
                     /note="40S ribosomal protein S13"
                     /codon_start=1
                     /product="small ribosomal subunit protein uS15"
                     /protein_id="NP_569116.1"
                     /db_xref="GeneID:161477"
                     /db_xref="RGD:621027"
                     /translation="MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKG
                     LTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHL
                     ERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA"
     exon            55..103
                     /gene="Rps13"
                     /inference="alignment:Splign:2.1.0"
     exon            104..182
                     /gene="Rps13"
                     /inference="alignment:Splign:2.1.0"
     exon            183..352
                     /gene="Rps13"
                     /inference="alignment:Splign:2.1.0"
     exon            353..453
                     /gene="Rps13"
                     /inference="alignment:Splign:2.1.0"
     exon            454..528
                     /gene="Rps13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttctctctt tgcttccaga cctccgccat catgggtcgc atgcacgctc ccgggaaggg
       61 cctgtcccag tcggcgctgc cctaccgccg tagcgtgccc acgtggctga agttgacgtc
      121 tgacgacgtg aaggaacaaa tttacaagtt ggccaagaaa ggcctgactc cttcccagat
      181 aggtgtgatt ctgagggact cacatggtgt ggcacaggtc cgttttgtga ccggaaataa
      241 aatcttgaga atccttaagt ccaaaggcct tgcccctgat cttcctgagg atctctacca
      301 tttgatcaag aaagcagttg ctgtcagaaa gcaccttgag aggaacagaa aagataagga
      361 tgctaaattc cgcctgattc taattgagag cagaattcac cggctggctc gatactataa
      421 gactaagcgg gtgctcccac ccaactggaa atatgagtca tccacagcct ctgctctggt
      481 ggcataaatg ctgttgcgta cacaagcaat aaaatcactt tgagtaaaaa aaaaaaaaaa
      541 aaaaaaaaa
//
