LOCUS       NM_031709                562 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus ribosomal protein S12 (Rps12), mRNA.
ACCESSION   NM_031709
VERSION     NM_031709.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 562)
  AUTHORS   Lan,X., Li,D., Zhong,B., Ren,J., Wang,X., Sun,Q., Li,Y., Liu,L.,
            Liu,L. and Lu,S.
  TITLE     Identification of differentially expressed genes related to
            metabolic syndrome induced with high-fat diet in E3 rats
  JOURNAL   Exp Biol Med (Maywood) 240 (2), 235-241 (2015)
   PUBMED   25294893
REFERENCE   2  (bases 1 to 562)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   3  (bases 1 to 562)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   4  (bases 1 to 562)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   5  (bases 1 to 562)
  AUTHORS   Won,K.J., Lee,P., Jung,S.H., Jiang,X., Lee,C.K., Lin,H.Y., Kang,H.,
            Lee,H.M., Kim,J., Toyokuni,S. and Kim,B.
  TITLE     3-morpholinosydnonimine participates in the attenuation of
            neointima formation via inhibition of annexin A2-mediated vascular
            smooth muscle cell migration
  JOURNAL   Proteomics 11 (2), 193-201 (2011)
   PUBMED   21204247
REFERENCE   6  (bases 1 to 562)
  AUTHORS   Vladimirov,S.N., Ivanov,A.V., Karpova,G.G., Musolyamov,A.K.,
            Egorov,T.A., Thiede,B., Wittmann-Liebold,B. and Otto,A.
  TITLE     Characterization of the human small-ribosomal-subunit proteins by
            N-terminal and internal sequencing, and mass spectrometry
  JOURNAL   Eur J Biochem 239 (1), 144-149 (1996)
   PUBMED   8706699
REFERENCE   7  (bases 1 to 562)
  AUTHORS   Wool,I.G., Chan,Y.L., Paz,V. and Olvera,J.
  TITLE     The primary structure of rat ribosomal proteins: the amino acid
            sequences of L27a and L28 and corrections in the sequences of S4
            and S12
  JOURNAL   Biochim Biophys Acta 1050 (1-3), 69-73 (1990)
   PUBMED   2207170
REFERENCE   8  (bases 1 to 562)
  AUTHORS   Lavergne,J.P., Marzouki,A., Reboud,J.P. and Reboud,A.M.
  TITLE     Topography and stoichiometry of acidic phosphoproteins in rat liver
            60 S ribosomal subunit
  JOURNAL   FEBS Lett 232 (1), 29-34 (1988)
   PUBMED   3366245
REFERENCE   9  (bases 1 to 562)
  AUTHORS   Lin,A., Chan,Y.L., Jones,R. and Wool,I.G.
  TITLE     The primary structure of rat ribosomal protein S12. The
            relationship of rat S12 to other ribosomal proteins and a
            correlation of the amino acid sequences of rat and yeast ribosomal
            proteins
  JOURNAL   J Biol Chem 262 (29), 14343-14351 (1987)
   PUBMED   3308890
REFERENCE   10 (bases 1 to 562)
  AUTHORS   Collatz,E., Ulbrich,N., Tsurugi,K., Lightfoot,H.N., MacKinlay,W.,
            Lin,A. and Wool,I.G.
  TITLE     Isolation of eukaryotic ribosomal proteins. Purification and
            characterization of the 40 S ribosomal subunit proteins Sa, Sc,
            S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18,
            S19, S20, S21, S26, S27', and S29
  JOURNAL   J Biol Chem 252 (24), 9071-9080 (1977)
   PUBMED   925037
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC058460.1.
            
            On Apr 14, 2007 this sequence version replaced NM_031709.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC058460.1, FQ217474.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-562               BC058460.1         5-566
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1p12"
     gene            1..562
                     /gene="Rps12"
                     /note="ribosomal protein S12"
                     /db_xref="GeneID:65139"
                     /db_xref="RGD:62024"
     exon            1..81
                     /gene="Rps12"
                     /inference="alignment:Splign:2.1.0"
     exon            82..132
                     /gene="Rps12"
                     /inference="alignment:Splign:2.1.0"
     CDS             119..517
                     /gene="Rps12"
                     /note="40S ribosomal protein S12"
                     /codon_start=1
                     /product="small ribosomal subunit protein eS12"
                     /protein_id="NP_113897.2"
                     /db_xref="GeneID:65139"
                     /db_xref="RGD:62024"
                     /translation="MAEEGIAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDK
                     RQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRK
                     VVGCSCVVVKDYGKESQAKDVIEEYFKCKK"
     exon            133..249
                     /gene="Rps12"
                     /inference="alignment:Splign:2.1.0"
     exon            250..352
                     /gene="Rps12"
                     /inference="alignment:Splign:2.1.0"
     exon            353..454
                     /gene="Rps12"
                     /inference="alignment:Splign:2.1.0"
     exon            455..541
                     /gene="Rps12"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agagcgctta aataccgtca tgcggccacc agcggccttt tcccctgccg ccgccaagtt
       61 ccgcggaggc ggaagctcgg gtgcgttcaa gattcggcgt cacccgtaat ccaccgccat
      121 ggccgaggaa ggcatagctg ctggaggtgt aatggacgtc aacactgctc tacaagaggt
      181 gctgaagacc gccctcatcc acgatggcct agcacgtggc atacgcgaag ctgccaaagc
      241 cttagacaag cgccaagccc atctctgcgt gcttgcatcc aactgtgatg agcccatgta
      301 tgtcaagctg gtggaggcgc tctgtgccga gcaccagatc aacctgataa aggttgatga
      361 caacaagaaa ctaggggaat gggtaggcct ctgtaaaatc gatcgagagg ggaagccacg
      421 gaaagtggtt ggttgcagtt gcgttgtagt taaggactat ggcaaagaat ctcaggccaa
      481 ggatgtcatc gaggagtact tcaaatgcaa gaaatgaata aataaaattt tggctcattt
      541 taaaaaaaaa aaaaaaaaaa aa
//
