LOCUS       NM_031110                534 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus ribosomal protein S11 (Rps11), mRNA.
ACCESSION   NM_031110
VERSION     NM_031110.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 534)
  AUTHORS   Zanivan,S., Maione,F., Hein,M.Y., Hernandez-Fernaud,J.R.,
            Ostasiewicz,P., Giraudo,E. and Mann,M.
  TITLE     SILAC-based proteomics of human primary endothelial cell
            morphogenesis unveils tumor angiogenic markers
  JOURNAL   Mol Cell Proteomics 12 (12), 3599-3611 (2013)
   PUBMED   23979707
REFERENCE   2  (bases 1 to 534)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   3  (bases 1 to 534)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 534)
  AUTHORS   Kuo,J.C., Han,X., Hsiao,C.T., Yates,J.R. 3rd and Waterman,C.M.
  TITLE     Analysis of the myosin-II-responsive focal adhesion proteome
            reveals a role for beta-Pix in negative regulation of focal
            adhesion maturation
  JOURNAL   Nat Cell Biol 13 (4), 383-393 (2011)
   PUBMED   21423176
REFERENCE   5  (bases 1 to 534)
  AUTHORS   O'Donohue,M.F., Choesmel,V., Faubladier,M., Fichant,G. and
            Gleizes,P.E.
  TITLE     Functional dichotomy of ribosomal proteins during the synthesis of
            mammalian 40S ribosomal subunits
  JOURNAL   J Cell Biol 190 (5), 853-866 (2010)
   PUBMED   20819938
REFERENCE   6  (bases 1 to 534)
  AUTHORS   Foster,L.J., Zeemann,P.A., Li,C., Mann,M., Jensen,O.N. and
            Kassem,M.
  TITLE     Differential expression profiling of membrane proteins by
            quantitative proteomics in a human mesenchymal stem cell line
            undergoing osteoblast differentiation
  JOURNAL   Stem Cells 23 (9), 1367-1377 (2005)
   PUBMED   16210410
REFERENCE   7  (bases 1 to 534)
  AUTHORS   Yu,Y., Ji,H., Doudna,J.A. and Leary,J.A.
  TITLE     Mass spectrometric analysis of the human 40S ribosomal subunit:
            native and HCV IRES-bound complexes
  JOURNAL   Protein Sci 14 (6), 1438-1446 (2005)
   PUBMED   15883184
REFERENCE   8  (bases 1 to 534)
  AUTHORS   Vladimirov,S.N., Ivanov,A.V., Karpova,G.G., Musolyamov,A.K.,
            Egorov,T.A., Thiede,B., Wittmann-Liebold,B. and Otto,A.
  TITLE     Characterization of the human small-ribosomal-subunit proteins by
            N-terminal and internal sequencing, and mass spectrometry
  JOURNAL   Eur J Biochem 239 (1), 144-149 (1996)
   PUBMED   8706699
REFERENCE   9  (bases 1 to 534)
  AUTHORS   Tanaka,T., Kuwano,Y., Ishikawa,K. and Ogata,K.
  TITLE     Nucleotide sequence of cloned cDNA specific for rat ribosomal
            protein S11
  JOURNAL   J Biol Chem 260 (10), 6329-6333 (1985)
   PUBMED   3838984
REFERENCE   10 (bases 1 to 534)
  AUTHORS   Collatz,E., Ulbrich,N., Tsurugi,K., Lightfoot,H.N., MacKinlay,W.,
            Lin,A. and Wool,I.G.
  TITLE     Isolation of eukaryotic ribosomal proteins. Purification and
            characterization of the 40 S ribosomal subunit proteins Sa, Sc,
            S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18,
            S19, S20, S21, S26, S27', and S29
  JOURNAL   J Biol Chem 252 (24), 9071-9080 (1977)
   PUBMED   925037
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from K03250.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: K03250.1, FQ221188.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132276, SAMD00132291
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..534
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q22"
     gene            1..534
                     /gene="Rps11"
                     /note="ribosomal protein S11"
                     /db_xref="GeneID:81774"
                     /db_xref="RGD:621026"
     exon            1..17
                     /gene="Rps11"
                     /inference="alignment:Splign:2.1.0"
     exon            18..149
                     /gene="Rps11"
                     /inference="alignment:Splign:2.1.0"
     exon            150..225
                     /gene="Rps11"
                     /inference="alignment:Splign:2.1.0"
     exon            226..355
                     /gene="Rps11"
                     /inference="alignment:Splign:2.1.0"
     exon            356..534
                     /gene="Rps11"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agatggcgga cattcagacg gagcgtgctt accaaaagca gcctacaatc tttcaaaaca
       61 agaaacgtgt tttgctggga gaaactggca aggaaaaact ccctcggtac tacaaaaaca
      121 tcggtctagg cttcaagacg cccaaggagg ccatcgaggg cacctacata gacaagaaat
      181 gccccttcac tggtaatgtc tccatccgag gacggatcct gtctggtgtt gtgacgaaga
      241 tgaagatgca gaggaccatt gtcatccgcc gggactatct ccattatatc cgaaagtaca
      301 accgctttga gaagcgtcac aagaacatgt ctgtgcacct gtccccctgt ttcagggacg
      361 tccagattgg cgacattgtc actgttggag agtgcaggcc tctgagcaag actgttcgat
      421 tcaatgtgct caaggtcacc aaggctgctg gcaccaagaa gcagttccag aagttctgag
      481 gggggactgt agccaatgct ctagaacaaa taaaagttat tttccaactt acag
//
