LOCUS       XM_008761343            8049 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus regulation of nuclear pre-mRNA domain
            containing 2 (Rprd2), transcript variant X2, mRNA.
ACCESSION   XM_008761343
VERSION     XM_008761343.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 19, 2024 this sequence was replaced by
            NM_001427343.1.
            
            On Jan 21, 2021 this sequence version replaced XM_008761343.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8049
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8049
                     /gene="Rprd2"
                     /note="regulation of nuclear pre-mRNA domain containing 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 42 ESTs, 3 long SRA reads, 5 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 209 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100364568"
                     /db_xref="RGD:2320792"
     CDS             1..4356
                     /gene="Rprd2"
                     /codon_start=1
                     /product="regulation of nuclear pre-mRNA domain-containing
                     protein 2 isoform X1"
                     /protein_id="XP_008759565.1"
                     /db_xref="GeneID:100364568"
                     /db_xref="RGD:2320792"
                     /translation="MAAGGGGGSSKASSSSASSAGALESSLDRKFQSVTNTMESIQGL
                     SSWCIENKKHHSTIVYHWMKWLRRSTYPHRLNLFYLANDVIQNCKRKNAIIFRESFAD
                     VLPEAAALVKDPSVSKSIERIFKIWEDRNVYPEDMIVALREALSTTFKTQKQLKENLN
                     KQPNKQWKKSQTSTNPKAALKSKIVAEFRSQALIEELLMYKRSEDQIELKEKQLSTMR
                     VDVCSTETLKCLKDKTGGKKFSKEFEEASSKLEEFVNGLDKQVKNGPSLTEALENAGI
                     FYEAQYKEVKVVANAYKTFANRVNNLKKKLDQLKSTLPDPEESPVPSPSMDAPSPTGS
                     ESPFQGMGGEESQSPTMESDKSATPEPVTDNRDVEDMELSDVEDDGSKIIVEDRKEKP
                     VEKPAVSTGVVTKSTENISKTSPCAPPSVPTTAAPPLPKPLNTSLLSPSPTLVLPNLA
                     NVDLAKISSILSSLTSVMKNTGVSSASRPSPGTPTSPSSLSSGLKTPAPATTPSHNPL
                     ANILSKVEITPESILSALSKTQTQSAPALQGLSSLLQSVTGNPVPASEAASQSTAASP
                     ASTTGSAVKGRNLLSNTQSFISKSFNYSPNSSTSEVSSTSASKASVGQSPVLPSTTFK
                     LPSSSLGFTGTHNTSPAAPPTEVAMCQSSEVSKPKPESESTSPSLEMKIHNFLKGNPG
                     FSGLNLNIPILSSLGSSAPSEGHSSDFQRGPTSTSVDNIDGTPVRDERSGTPTQDEMM
                     DKPTSSSVDTMSLLSKIISPGSSTPSSIRSPPAGGDESYPQEPPSSVSTYRPFGLGGG
                     SPYKQSSSAVERPSSLMDSSQEKLFPDTSFQEDEDYRDFEYSGPPPSAMMNLEKKPAK
                     SILKSSKLSDATEYQPILSSYNHRAQEFGGKSAFPPSVRALLDSSENCDRLSSPPGLF
                     GAFSIRGSEPGSERSPSPSKNDSFFTPDSNHSGLSQSTAGHLTLPQTQYPDSPHSVPH
                     RSVFSSQNTLAAPAGHPPTSGVEKVLASTISTTSTIEFKNMLKNASRKPSDDKHFGQT
                     PNKGTSSDGVSLSNLTQPSLPTTDQQQEEHYRIETRVSSSCLDLPDSTEEKGAPIETL
                     GYHNAANRRMSGEPIQTVESVRVPGKGNRGHGREVSRVGWFDLSTPGSSFDNGPSSAS
                     ELASLGGGGSGGLTGFKTTPYKERAPQFQESVTSFRSNSFNSTFEHHLPPSPLEHGTP
                     FQREPVGPSSAPPAPPKDHGGIFSREAPTHLPSVDLSNPFTKEASLAHAGPPPPPGEH
                     SGVPFPPPPPPPPPGELSSGGSGVPFATPPPPPPPVDHSGVVPFPTPPLPEHGVTGAV
                     AVFPKDHSSLLQGTMAEHFGVLTGPRDLNGPGLSRARESLSLPSHPLDHLGPALGGGG
                     GGNSSSSGLPLGPAHRDAISRSGVVFRSPRPDFRPREAFLGRDPFHSLKRPRPPFVRG
                     PPFFAPKRPFFPPRY"
ORIGIN      
        1 atggcggccg gcggcggcgg aggcagcagt aaggcctcct cctcgtcggc ctcgtccgca
       61 ggggccctgg agtcctcgtt ggatcgaaaa ttccagtcgg tgaccaacac catggaatcc
      121 attcaaggct tgtcgtcctg gtgtatagaa aataagaaac accacagtac aatcgtctac
      181 cattggatga agtggctccg gagatccaca tatccccacc gtttgaatct cttttatctt
      241 gccaatgatg tcatacagaa ttgtaaaagg aaaaatgcaa tcatatttcg agaatcattt
      301 gctgatgtgc ttcctgaagc tgctgctcta gtgaaggatc catctgtctc taagtctata
      361 gaacgaatct ttaaaatctg ggaagataga aatgtgtacc cagaagacat gattgtggca
      421 ttgagagaag ctttaagtac cactttcaaa actcagaagc agctgaaaga aaatctgaac
      481 aaacaaccga ataagcagtg gaagaaatca caaacatcca cgaatccaaa agctgctctc
      541 aaatctaaga ttgttgctga gtttcgatct caggccctca ttgaagaatt gttgatgtac
      601 aaacgctcag aagatcagat agaactgaag gagaaacagt tgtcaaccat gagagtggat
      661 gtctgcagca cagaaactct caagtgttta aaagataaaa caggtggaaa gaagttctcc
      721 aaagaatttg aagaagcaag ttccaagcta gaggaatttg tgaatggact agataagcag
      781 gtgaaaaatg ggccctcgct aacggaagca ttagagaatg ctgggatctt ctatgaagca
      841 cagtacaaag aagtgaaagt ggtagctaac gcttacaaaa ccttcgctaa ccgagtaaac
      901 aacttaaaga agaagttgga tcagttgaag tcaacccttc ctgatcctga ggagtcacca
      961 gtcccctctc caagtatgga tgctccttct ccaactggtt ccgagtctcc atttcagggt
     1021 atgggaggtg aagaatccca gtcaccaacc atggagagtg acaaatctgc cacacctgag
     1081 cctgtgacag ataaccgtga cgtggaggac atggaactct cagatgtgga agatgatgga
     1141 tcaaaaatca ttgtggagga caggaaagaa aaacctgtgg agaaaccagc tgtctctact
     1201 ggtgtggtca ccaagtcaac agaaaatatc tcgaaaacct caccatgtgc cccaccgtct
     1261 gtgcccacga cagcagcccc gcctctccca aagcctctga acacttcact tctgtcccct
     1321 tccccaactt tggttttgcc aaacctggca aatgtggatc tggcaaagat cagttccatc
     1381 cttagcagcc taacatcagt catgaaaaat acgggggtca gttctgcatc aagaccttct
     1441 ccaggaactc ctaccagtcc cagcagcctc agcagtggcc tgaaaacacc tgcacccgcc
     1501 acaacaccat ctcacaaccc tctggcaaat atcctgtcaa aggtggagat caccccagag
     1561 agcatcctct ctgctctttc taaaacccag acacagtcag cccctgcact tcaaggcttg
     1621 tcatctttac ttcagagtgt tactgggaac cctgtgccag ccagtgaagc tgcttcacag
     1681 agcactgcgg cctcccctgc cagcaccaca ggctctgctg taaaggggag aaatctgctc
     1741 tccaataccc agtcttttat ttccaagagc ttcaactatt ctcccaattc ttcaacttct
     1801 gaagtctctt ccacgtcagc aagcaaggca tccgttgggc agagcccagt cctcccaagc
     1861 actactttta aactaccgtc cagttcttta ggatttacag gcacacacaa tactagccct
     1921 gctgccccac ctactgaagt tgccatgtgc caatcctcag aggtctccaa gccaaagcca
     1981 gaatcagagt ccacctctcc aagcctggaa atgaagatcc acaatttcct gaaaggtaat
     2041 cctggtttca gcggcttgaa cttaaacatc ccaatcctga gcagcctggg gtccagtgcc
     2101 ccatcagagg gccattcctc ggacttccag cgtggtccta ccagcacttc agttgacaac
     2161 atcgatggaa ctccggttcg ggatgaacgg agtgggacac ccacccagga tgagatgatg
     2221 gataagccta catccagcag tgtagacact atgtccctac tgtctaagat catcagccct
     2281 ggttcctcaa cacccagcag tataagatcg ccacctgctg gaggagatga aagctacccc
     2341 caggagcccc ccagttctgt gtctacatat cgaccctttg gcctgggcgg tggctctccc
     2401 tacaagcagt cttctagtgc agttgagagg ccgtcatcac tgatggactc ttcacaggaa
     2461 aagctcttcc cagatacttc cttccaggaa gatgaggact accgagactt tgaatattca
     2521 gggcctccac catctgccat gatgaaccta gagaagaaac cagccaaatc tatcctgaag
     2581 tcaagcaagc tttctgatgc caccgagtac cagccaatcc tgtctagtta caaccacagg
     2641 gcccaagagt ttgggggcaa gtctgccttt cctccatctg taagggccct cctggactct
     2701 agtgagaact gtgaccgcct ctcatctccc cctgggctct ttggtgcctt cagcataaga
     2761 gggagtgaac ctgggtctga gcggtcacca tctccgagta aaaatgattc atttttcacc
     2821 cctgactcca accacagtgg cttgtctcag tctactgctg gacatctcac tttgccacag
     2881 acgcagtacc cagactctcc tcactcagtc ccacatcggt ccgttttctc ttcacagaat
     2941 acccttgccg ctccagcggg tcacccaccc acatcaggcg tggagaaagt cctggcctct
     3001 acgatttcca ccacatcgac gattgagttt aagaacatgc ttaaaaatgc ctcacgcaag
     3061 ccctcagacg ataagcattt tggccagacc cccaacaagg gtacttcaag tgatggtgtc
     3121 agtctgtcaa acctcaccca gcccagcttg cctaccactg accagcaaca agaagaacac
     3181 tatcgaatag aaactcgtgt ttcctcctcc tgtttagact tgcctgacag cacagaagaa
     3241 aagggggccc ccatagaaac tctaggttat cataacgcag ctaataggag gatgtcaggg
     3301 gagccgatac agactgtaga gtctgtaaga gttcctggga agggaaatag aggacatggg
     3361 cgggaggttt ccagagtggg ttggtttgat ctgagcacac caggcagctc ttttgacaat
     3421 ggtccctcaa gtgcctctga gttggcatcc cttgggggtg ggggcagcgg aggcctaact
     3481 ggctttaaga caacgccgta caaggaacgg gcaccccagt ttcaggagag tgtcaccagc
     3541 tttcgttcca acagtttcaa ctcaacattt gagcatcatc tccccccatc ccccttggaa
     3601 catgggacac ccttccagag agagccagtg gggccgtcat ctgccccacc tgcccctcct
     3661 aaggatcatg gtggtatctt ctctcgagag gcacccactc atctgccctc tgtggatctt
     3721 tcgaacccct ttacaaagga ggcatctctg gcccatgctg gcccaccacc tcctcctgga
     3781 gagcacagtg gagttccttt ccctccacca ccccctcctc caccccctgg ggaacttagc
     3841 agtggaggga gtggtgtccc ctttgctact ccgccccctc ctccaccccc tgttgaccac
     3901 tctggggttg tacctttccc aactccacca ctgccagagc atggagtgac tggggctgtg
     3961 gcagtttttc ccaaggacca tagttccctc cttcaaggga ccatggctga gcattttggg
     4021 gtgctcacag gacccaggga cctcaatggc cctggtctta gccgtgcacg agagagcctg
     4081 agcctgcctt cccaccctct ggatcacctg ggcccagccc ttggaggagg tgggggaggc
     4141 aacagcagca gcagtggcct tcccttgggt cctgcacaca gagacgccat cagccgaagt
     4201 ggtgtggttt tccggagtcc ccggccagac ttccggccca gggaagcttt tctcggcaga
     4261 gacccgttcc acagtttaaa gaggcccagg ccgccttttg ttagaggccc tccgttcttt
     4321 gcaccaaaac gcccattctt ccctcccagg tactgatgga aatctgggga aggcattttg
     4381 aacagtctag agagcattgg aagtagcagt ttgggttttt gttttaattt gtttttcctt
     4441 tcttgatttt tgttttgttt cattttgttt tttaatgaag ggccttcctt ccaaattcag
     4501 aaagcataca tggtaacagt ttgctattat ccagtcctct ctccacacct aggacctttc
     4561 ccaagttgtt tgtatttttt cttaaaacaa aaaaaccaag taaacataac caaagccaca
     4621 atggctgggg gtgtggggag tggggaggaa aaccgttatt ttatcccacc tattggagag
     4681 attatttaca ttcaaaataa accttcggtc agcacagata ctaacgtgca atgctgggtg
     4741 ttatttgggt cttggcctgg ctggtgctca gtaggaggat ccctgtctcc ttccctccag
     4801 ctaagcaacg tctgtaacca gcttggctcc ccctttatat tctctgccct gcagaaggcc
     4861 tagagtgtgc agagagacag tgcaggcagt tctgggcccg tcgggtgtgt ttgcttaatt
     4921 ctaaggcatg ctgaaacaga gcactttgcc ttttttaagc agcctccact gaactataac
     4981 caggcagtta ctctgaggca gtacaaactt catactatgt agtaaaaagt tctcttgctg
     5041 gatgtggtag aacacagaac cccagcactg ggaggcaggg acaagagaat ggcaagtttg
     5101 aggccagctt gggctacgta gtggaacttt gtctcaaaaa gaaagaaaaa cgaagtctct
     5161 ttgttgaaag aaaaagctga atataatttc aaggttaaaa tgggaaatga tcacaatgtg
     5221 taaaactagg gaagggtcat tcagtggtgc tgtgtgacca tcctttgtaa acaaggacaa
     5281 gggaaacatt ttgatggttc tgcatttctc ttctaagccc ttgtcttctg atttccctta
     5341 ctttttctcc ctcagttatt ctaagttggt gagtgtaggt aaaatatcat ccctgccttc
     5401 ttaaatattt aagtagacac tttactatgg tgcctaactg gtggttgtca gcaaacatta
     5461 actattagag aaaggaaaat attttgtctt tatagtttct ttctgccccc accccatctc
     5521 agtcctatat tcacctgttc ttgctgttca gaggcgattg agtggtatcc ttgtatgaca
     5581 gctgtgtagg tgtgtcttag agacaggtgg gtattgctgg ccatgccttt acagagaatc
     5641 ggtgtcctgg tgaatccatg ttagccctca gcaaatagca acttggtgct tccagtgccc
     5701 accttcaatc ccccaccctc ttgtcacctg ctacttgttc tgcctgagtc attgctgtgg
     5761 cggggagagc tcttccctgc agtaaagggc ttgtttgtgt tactgcatct agttcttaag
     5821 gtaaagacaa tcactgtgct cggagtgttt ctgtctttgt atctggggag caaatactgc
     5881 atagtaggtt ttctgttggt gtgttgcacc agggtgcatg ctgataatct ccagctaggt
     5941 gtgcaaaaca atgtgttgag cttttgaagg aattccagca agttaacata gaggtaaagg
     6001 agtactttgg atttctcagt ggggtagcaa aaatggatgg aagtgtggca tgtggtcaca
     6061 gacaatcctt tgtctcagaa caaaccactt ttttttcctg aagaaagact gtccagcaca
     6121 acctgggagc tgtgttctgt gtgaacgatg cagcaagaca ttctcagaat tcacatcccg
     6181 tttggagcca gttctttctt tcctccctca agcctctctg ccctgtagat ctccccacaa
     6241 aaatgcatga tatcatgacc tcgtgtgtga ggttgggtat atagcatagc aaagcaaggg
     6301 aaatatagtt atatattgag tcttaagaca tttctttagt aaaaaagtat caaacaatgg
     6361 gggtgggggc agggaaattg tgactttcag aattaatttt tttcccagaa attaagtggg
     6421 ggtgtttttc agtctagaat aaaagaatgt gaattctttc caccactctt atttaagctt
     6481 aaacatactg tttacttgaa aaggctctct gaccatttaa ttttctaaaa aaaacaaaca
     6541 aacaaacaaa aaaaaaaaac agggaagtat caggaaagtg gcttctggaa tgttgaagca
     6601 ggataacttg tcttcaaaaa cctagtggcc accacatgac aggagtgctt tgtgcagttc
     6661 aaggatggac tttccagggc ctgggggttt gtgggatatt ttttgttttg tttttgccac
     6721 aagatcttca gtgtgtttgt ttcagggtgg aagtgggggt tgtatgaagc tgtcagatat
     6781 tctaaggaaa tcttcctgca acagtaaatg aagacaactg tatatttgtg atatagtgaa
     6841 acaaaagaca tttctggtat tcataaagat aaagcaagga ttttattctt cctgtgtctg
     6901 tgatttaaac tcggtaccat actctgactt ttgtatttca ccctgagttt aaaaataaat
     6961 aaacaagata ttttttaaag aatgaacaac atagtgtgtc ttagcaagga catgagtcat
     7021 atgaagcaga atgagtagtt gtcactgagg tcctcaatgc tcactgtaaa gccacacaga
     7081 attccatgaa tactccaatg ccacacagag ctcagcaatg ctatgtcaga taggatcctt
     7141 aaggggtttc agagagttta ttcagcttag acaggagcac ctctctgccc tctgaggtca
     7201 gcagaacttg gtttgactcc tgggagggta tcaggagcaa actaggactt ttctcctctc
     7261 tgaacccaga aacagtgttt atgataacgt gtggtacagc aaaccgatcc agaccatatg
     7321 agtagactca gctttcttac tgcagagtat ccactcagtc ctaatattac ctggtgatgg
     7381 agttaggcct cagctgttag tttttgaagc ggctgtaaat tactgctcct acccccacct
     7441 tcatattttt aactggtggg gttacttgtt aagatttttt taaaaagtag atatgttgga
     7501 ttgatattct cacgtgttca gtgtggaaaa caagtacatg ctttagaggc aacaacagtg
     7561 aaatcctttt ggaatgtgta ttaatatcaa taaaataact agttctaaag gtttgacatt
     7621 tttctttgag attggggctt tgaccaaggg cccttggctt ttctggtaag tgcaagcaga
     7681 agcgacttct cttctccagg agccaaaaca gcagcattat agcacagacc tatgttaaat
     7741 tctccagtga agatacatct tgactatcca gggccagagg tgaaacaggc ttcagaatgc
     7801 agaaaagctg ggggacagcc ctgaagatgc cactaaactg gcttttcacc agagggtatg
     7861 tgggaaggac agaaggcggt gtgtaccccc cacttacctg aggcatatgt gccacaaacc
     7921 tgcccacctt gtctgttttc ttcatagcca cttagactta cctctccgag cttcttggaa
     7981 aaaacaaact gtgtccaata ttttgttttc cagcttaata aaatatggtt ttgtttgttg
     8041 cgtggttaa
//
