LOCUS       NM_001007598             723 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribosomal protein L9 (Rpl9), mRNA.
ACCESSION   NM_001007598 XM_341213
VERSION     NM_001007598.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Zanivan,S., Maione,F., Hein,M.Y., Hernandez-Fernaud,J.R.,
            Ostasiewicz,P., Giraudo,E. and Mann,M.
  TITLE     SILAC-based proteomics of human primary endothelial cell
            morphogenesis unveils tumor angiogenic markers
  JOURNAL   Mol Cell Proteomics 12 (12), 3599-3611 (2013)
   PUBMED   23979707
REFERENCE   2  (bases 1 to 723)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   3  (bases 1 to 723)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   4  (bases 1 to 723)
  AUTHORS   Kuo,J.C., Han,X., Hsiao,C.T., Yates,J.R. 3rd and Waterman,C.M.
  TITLE     Analysis of the myosin-II-responsive focal adhesion proteome
            reveals a role for beta-Pix in negative regulation of focal
            adhesion maturation
  JOURNAL   Nat Cell Biol 13 (4), 383-393 (2011)
   PUBMED   21423176
REFERENCE   5  (bases 1 to 723)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   6  (bases 1 to 723)
  AUTHORS   Odintsova,T.I., Muller,E.C., Ivanov,A.V., Egorov,T.A., Bienert,R.,
            Vladimirov,S.N., Kostka,S., Otto,A., Wittmann-Liebold,B. and
            Karpova,G.G.
  TITLE     Characterization and analysis of posttranslational modifications of
            the human large cytoplasmic ribosomal subunit proteins by mass
            spectrometry and Edman sequencing
  JOURNAL   J Protein Chem 22 (3), 249-258 (2003)
   PUBMED   12962325
REFERENCE   7  (bases 1 to 723)
  AUTHORS   Angelastro,J.M., Torocsik,B. and Greene,L.A.
  TITLE     Nerve growth factor selectively regulates expression of transcripts
            encoding ribosomal proteins
  JOURNAL   BMC Neurosci 3, 3 (2002)
   PUBMED   11922865
REFERENCE   8  (bases 1 to 723)
  AUTHORS   Monach,P.A., Meredith,S.C., Siegel,C.T. and Schreiber,H.
  TITLE     A unique tumor antigen produced by a single amino acid substitution
  JOURNAL   Immunity 2 (1), 45-59 (1995)
   PUBMED   7600302
REFERENCE   9  (bases 1 to 723)
  AUTHORS   Suzuki,K., Olvera,J. and Wool,I.G.
  TITLE     The primary structure of rat ribosomal protein L9
  JOURNAL   Gene 93 (2), 297-300 (1990)
   PUBMED   2227441
REFERENCE   10 (bases 1 to 723)
  AUTHORS   Tsurugi,K., Collatz,E., Wool,E.G. and Lin,A.
  TITLE     Isolation of eukaryotic ribosomal proteins. Purification and
            characterization of the 60 S ribosomal subunit proteins L4, L5, L7,
            L9, L11, L12, L13, L21, L22, L23, L26, L27, L30, L33, L35', L37,
            and L39
  JOURNAL   J Biol Chem 251 (24), 7940-7946 (1976)
   PUBMED   1002715
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC060589.1 and BC086561.1.
            
            On Apr 13, 2007 this sequence version replaced NM_001007598.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC060589.1, CB314568.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-18                BC060589.1         5-22
            19-723              BC086561.1         1-705
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14p11"
     gene            1..723
                     /gene="Rpl9"
                     /note="ribosomal protein L9"
                     /db_xref="GeneID:29257"
                     /db_xref="RGD:62049"
     exon            1..23
                     /gene="Rpl9"
                     /inference="alignment:Splign:2.1.0"
     exon            24..70
                     /gene="Rpl9"
                     /inference="alignment:Splign:2.1.0"
     CDS             25..603
                     /gene="Rpl9"
                     /note="60S ribosomal protein L9"
                     /codon_start=1
                     /product="large ribosomal subunit protein uL6"
                     /protein_id="NP_001007599.3"
                     /db_xref="GeneID:29257"
                     /db_xref="RGD:62049"
                     /translation="MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVE
                     LSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPIN
                     VVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAAL
                     IQQATTVKNKDIRKFLDGIYVSEKGTVQQPDE"
     exon            71..186
                     /gene="Rpl9"
                     /inference="alignment:Splign:2.1.0"
     exon            187..282
                     /gene="Rpl9"
                     /inference="alignment:Splign:2.1.0"
     exon            283..415
                     /gene="Rpl9"
                     /inference="alignment:Splign:2.1.0"
     exon            416..496
                     /gene="Rpl9"
                     /inference="alignment:Splign:2.1.0"
     exon            497..611
                     /gene="Rpl9"
                     /inference="alignment:Splign:2.1.0"
     exon            612..690
                     /gene="Rpl9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctctttgccc catctactgc gagaatgaag accattctca gcaatcagac tgtcgacatt
       61 ccagaaaatg tcgacatcac tctgaagggg cgcacagtca ttgtgaaggg ccccagagga
      121 actctgagga gggacttcaa tcacatcaat gtagagctga gtcttcttgg aaagaaaaag
      181 aaaaggctcc gtgttgacaa gtggtggggt aacaggaagg aactggccac tgtcagaacc
      241 atctgcagtc atgttcagaa catgatcaag ggtgtgacac tgggcttccg ttacaagatg
      301 aggtctgtgt atgctcactt ccctatcaac gtcgttattc aggagaatgg gtctctggtt
      361 gaaatccgaa atttcttggg tgaaaaatac atccggaggg ttcggatgag gacaggtgtt
      421 gcttgttctg tctctcaagc ccagaaggat gagttaatcc ttgaaggaaa tgatattgaa
      481 cttgtttcaa attcagcggc tctgattcag caagccacaa cagttaaaaa caaggatatc
      541 aggaagtttt tggatggcat ctatgtttct gagaagggaa ccgtccagca gcctgacgaa
      601 tgagacctca gtttcctagc ttcagaaaca agatcctgat aacaagtaca gtttgggctc
      661 tgtggaaaca ataaaagact tatatattga aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
      721 aaa
//
