LOCUS       NM_001399334            2500 bp    mRNA    linear   ROD 22-SEP-2024
DEFINITION  Rattus norvegicus ribosomal protein L7-like 1 (Rpl7l1), mRNA.
ACCESSION   NM_001399334 XM_228615
VERSION     NM_001399334.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2500)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 2500)
  AUTHORS   Cui,W., Dai,X., Marcho,C., Han,Z., Zhang,K., Tremblay,K.D. and
            Mager,J.
  TITLE     Towards Functional Annotation of the Preimplantation Transcriptome:
            An RNAi Screen in Mammalian Embryos
  JOURNAL   Sci Rep 6, 37396 (2016)
   PUBMED   27869233
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2500)
  AUTHORS   Maserati,M., Dai,X., Walentuk,M. and Mager,J.
  TITLE     Identification of four genes required for mammalian blastocyst
            formation
  JOURNAL   Zygote 22 (3), 331-339 (2014)
   PUBMED   23211737
REFERENCE   4  (bases 1 to 2500)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   5  (bases 1 to 2500)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Jan 6, 2022 this sequence version replaced XM_228615.9.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.2003894.1,
                                           SRR26360176.1393607.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-329               JAXUCZ010000009.1  21695718-21696046
            330-438             JAXUCZ010000009.1  21696752-21696860
            439-599             JAXUCZ010000009.1  21697700-21697860
            600-737             JAXUCZ010000009.1  21698625-21698762
            738-847             JAXUCZ010000009.1  21699900-21700009
            848-1067            JAXUCZ010000009.1  21700146-21700365
            1068-2500           JAXUCZ010000009.1  21702304-21703736
FEATURES             Location/Qualifiers
     source          1..2500
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q12"
     gene            1..2500
                     /gene="Rpl7l1"
                     /gene_synonym="RGD1308469"
                     /note="ribosomal protein L7-like 1"
                     /db_xref="GeneID:317275"
                     /db_xref="RGD:1308469"
     exon            1..329
                     /gene="Rpl7l1"
                     /gene_synonym="RGD1308469"
                     /inference="alignment:Splign:2.1.0"
     CDS             289..1056
                     /gene="Rpl7l1"
                     /gene_synonym="RGD1308469"
                     /note="60S ribosomal protein L7-like 1"
                     /codon_start=1
                     /product="ribosomal protein uL30-like"
                     /protein_id="NP_001386263.1"
                     /db_xref="GeneID:317275"
                     /db_xref="RGD:1308469"
                     /translation="MSSSWSTGKMAEEGERKKIPLVPENLLKKRKAYQALKATQAKQA
                     LLAKRERKGKEFRFRRLESFVHDSWRQQRDKVRVRRLEVKPRALEVPDKHSLAFVIRM
                     ERIQGVSLLVKSTIMKLGLKKLFSGVFVKVTPQSMRMLRTVEPYVTWGFPNLKSVREL
                     ILKRGQAKINNKTVPLTDNTVIEEHLGQFGVICLEDLIHEIAFPGKHFQQISSFLCPF
                     HLSVARHATKNRVGFLKEMGSPGYRGDRINQLIRQLN"
     exon            330..438
                     /gene="Rpl7l1"
                     /gene_synonym="RGD1308469"
                     /inference="alignment:Splign:2.1.0"
     exon            439..599
                     /gene="Rpl7l1"
                     /gene_synonym="RGD1308469"
                     /inference="alignment:Splign:2.1.0"
     exon            600..737
                     /gene="Rpl7l1"
                     /gene_synonym="RGD1308469"
                     /inference="alignment:Splign:2.1.0"
     exon            738..847
                     /gene="Rpl7l1"
                     /gene_synonym="RGD1308469"
                     /inference="alignment:Splign:2.1.0"
     exon            848..1067
                     /gene="Rpl7l1"
                     /gene_synonym="RGD1308469"
                     /inference="alignment:Splign:2.1.0"
     exon            1068..2500
                     /gene="Rpl7l1"
                     /gene_synonym="RGD1308469"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgggaagcc tttaactcgt tgacaggcgg ccgtgttcga ggcgctacat tcctaaccga
       61 aaaaggctgg atctagacgg gtgtcagact ctagaaaacc tagaaggaat gtgacggaaa
      121 ctcctccagt ttttgctgga atcagggcta gcaagaccat ttctcagaac ctcacagccg
      181 ctaaggaatc tcaggccgcc tgagtcctcc agcgtgagcg agagtcccgt ctctatgatc
      241 aaggagacat agaggcgggc ctctctaccc tgcctggtga gactgcgcat gagcagtagc
      301 tggagcactg ggaagatggc ggaggaaggg gaaagaaaaa agatcccttt ggttccagaa
      361 aatctcctga aaaagaggaa ggcttatcaa gcgctcaaag ccactcaggc aaagcaggct
      421 cttttggcaa agagagagag aaaagggaaa gaattccggt ttagacgact agaatctttc
      481 gtgcatgatt cctggcggca gcaacgagac aaggtgcgtg tccggcgact agaagtgaag
      541 ccgcgcgctt tggaggtccc tgataaacac tccttggcct tcgttatacg catggaaagg
      601 attcaaggag tgagtttatt ggtaaagagc accatcatga aacttggcct gaagaagttg
      661 ttcagtggcg tctttgtcaa ggtcacccct cagagtatga gaatgctgcg cacagtggag
      721 ccttatgtga cctggggatt tccaaatctg aagtctgtcc gagaactcat cttgaagcgt
      781 ggacaagcaa agattaacaa taagactgtc cctctgaccg acaacacagt gattgaggag
      841 cacttggggc agtttggtgt catttgcctg gaagacctca tccatgaaat tgccttccct
      901 gggaagcatt tccagcagat ctcttcattc ttgtgccctt tccacctctc tgtggcccgt
      961 catgctacca agaatagagt gggcttcctc aaggagatgg gctcgcctgg ctaccggggt
     1021 gaccgcatca accagctcat ccggcagctc aactagagca ggagcaggtt ttccaaaagc
     1081 atgaattgga aatgcttttg tttgtataaa attaccaagt atcttcagag aagattattt
     1141 tctgccttca aaaactgaag gaaagggcca ggagaaccac agtagggtgt gcgagcatcg
     1201 aagacattta gcagggacca gttcatggaa cagggcgatt gttctccagt tggctgcccg
     1261 tctctgagat ccgcacaagc tgtggaggaa agaactgccc tgccttcctt ccatctcggt
     1321 gtttaatgtt gggtgagcga ctagcccaag tatccctccc acgccctcca agactcttaa
     1381 agcagtgggg cagaccaagg ggcacacttg aatctggatg aagagggtct tggttttact
     1441 ttttattttt gtcagagatg gttggtttgt tcaatacaac gtcttcctgt gtggccctgg
     1501 ctagccttaa actccacagc agccctgcct ccgccccgcc ctgaaaccca cgcccacccc
     1561 cagctgttgg tgtataagcc tgggggcttg ttcctcaggc agaaaggcaa caatggtggt
     1621 gctcagtctt atgtgaggcc atgttacaac cgctttggga cctctggggc ttgctgccct
     1681 tgatcagtgt aacagcattt gtaccctgac ctgcagtgac agtcctttcc tgtagctcag
     1741 gatttagaaa aacacaagca taaatccata cactgtgctt ggaactccac aacggtgaca
     1801 cacaccctct tggcacacgg aagtcttttg tgaggacagc ctgtttttct atgcacattg
     1861 gtctgtgaag ttagtcttgt tctgtgctac aggaggggac tgaagttcaa ccacttgttt
     1921 tcaactacga aatagtgttt agctgggcct gatggcacac acctttagtc acaacacttg
     1981 agaggcagag gcaggcagat ctcctgagtt caaggccagg caagcctgtt ctacagagtt
     2041 ccaggatacc cagggctaca cacagagaaa atattaaaga ccaacaaaaa ccaatgatat
     2101 gaaagactat tgtttttaaa cttcccatac ccaggaaacg ccccctaaac ttcgcccttg
     2161 gcttaaggat tcccgtcttg cctttcctta aaacccacat gagtccacat tcctaacaca
     2221 tgcttccctt gggcttgcct ataaccctga cttcatgggg ccttgggata tcagtggtaa
     2281 ctgttgtagg gcattgggaa atgaggtgac caaaaatgca ttgcagtctt ggagaaatga
     2341 gtcctggatc ttactaagtt ggggagcact gcagtgttgg tggtgcttgt ctgctgtgta
     2401 agagcccctg gatgagctga gccaagtctt ccatttctag ttgctcagag tttaaagcaa
     2461 gggttttttc tatatagtaa aagatgattt ttaaaattta
//
