LOCUS       NM_053971                958 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribosomal protein L6 (Rpl6), mRNA.
ACCESSION   NM_053971
VERSION     NM_053971.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 958)
  AUTHORS   Behrmann,E., Loerke,J., Budkevich,T.V., Yamamoto,K., Schmidt,A.,
            Penczek,P.A., Vos,M.R., Burger,J., Mielke,T., Scheerer,P. and
            Spahn,C.M.
  TITLE     Structural snapshots of actively translating human ribosomes
  JOURNAL   Cell 161 (4), 845-857 (2015)
   PUBMED   25957688
REFERENCE   2  (bases 1 to 958)
  AUTHORS   Guo,Z., Neilson,L.J., Zhong,H., Murray,P.S., Zanivan,S. and
            Zaidel-Bar,R.
  TITLE     E-cadherin interactome complexity and robustness resolved by
            quantitative proteomics
  JOURNAL   Sci Signal 7 (354), rs7 (2014)
   PUBMED   25468996
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 958)
  AUTHORS   Voorhees,R.M., Fernandez,I.S., Scheres,S.H. and Hegde,R.S.
  TITLE     Structure of the mammalian ribosome-Sec61 complex to 3.4 A
            resolution
  JOURNAL   Cell 157 (7), 1632-1643 (2014)
   PUBMED   24930395
REFERENCE   4  (bases 1 to 958)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   5  (bases 1 to 958)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   6  (bases 1 to 958)
  AUTHORS   Horne,Z. and Hesketh,J.
  TITLE     Immunological localization of ribosomes in striated rat muscle.
            Evidence for myofibrillar association and ontological changes in
            the subsarcolemmal:myofibrillar distribution
  JOURNAL   Biochem J 268 (1), 231-236 (1990)
   PUBMED   2188648
REFERENCE   7  (bases 1 to 958)
  AUTHORS   Hultin,T.
  TITLE     Selective high-efficiency cross-linking of mammalian ribosomal
            proteins with cleavable thiol-directed heterobifunctional reagents:
            identification and binding directions of major protein complexes
  JOURNAL   Biochim Biophys Acta 872 (3), 226-235 (1986)
   PUBMED   3730400
REFERENCE   8  (bases 1 to 958)
  AUTHORS   Ulbrich,N., Chan,Y.L., Huber,P.W. and Wool,I.G.
  TITLE     Separate binding sites on rat liver ribosomal protein L6 for 5 S
            and 5.8 S ribosomal ribonucleic acids and for transfer ribonucleic
            acids
  JOURNAL   J Biol Chem 257 (19), 11353-11357 (1982)
   PUBMED   7118887
REFERENCE   9  (bases 1 to 958)
  AUTHORS   Ulbrich,N., Lin,A. and Wool,I.G.
  TITLE     Identification by affinity chromatography of the eukaryotic
            ribosomal proteins that bind to 5.8 S ribosomal ribonucleic acid
  JOURNAL   J Biol Chem 254 (17), 8641-8645 (1979)
   PUBMED   468846
REFERENCE   10 (bases 1 to 958)
  AUTHORS   Wittmann-Liebold,B., Geissler,A.W., Lin,A. and Wool,I.G.
  TITLE     Sequence of the amino-terminal region of rat liver ribosomal
            proteins S4, S6, S8, L6, L7a, L18, L27, L30, L37, L37a, and L39
  JOURNAL   J Supramol Struct 12 (4), 425-433 (1979)
   PUBMED   398910
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC097295.1.
            
            On Aug 30, 2012 this sequence version replaced NM_053971.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC097295.1, BC078761.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760476, SAMN06621351
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-958               BC097295.1         5-962
FEATURES             Location/Qualifiers
     source          1..958
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q16"
     gene            1..958
                     /gene="Rpl6"
                     /note="ribosomal protein L6"
                     /db_xref="GeneID:117042"
                     /db_xref="RGD:619826"
     exon            1..266
                     /gene="Rpl6"
                     /inference="alignment:Splign:2.1.0"
     CDS             3..899
                     /gene="Rpl6"
                     /note="60S ribosomal protein L6; neoplasm-related protein
                     C140"
                     /codon_start=1
                     /product="large ribosomal subunit protein eL6"
                     /protein_id="NP_446423.2"
                     /db_xref="GeneID:117042"
                     /db_xref="RGD:619826"
                     /translation="MAGEKAEKPDKKEQKPAAKKAGGDATAPRALPAGAVKKSSSKAK
                     KLRKSKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATV
                     TKTVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPGTVL
                     IILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKI
                     PKHLTDAYFKKKPLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDSQILPKIKAVPQ
                     LQGYLRSQFSLTNGMYPHKLVF"
     exon            267..368
                     /gene="Rpl6"
                     /inference="alignment:Splign:2.1.0"
     exon            369..512
                     /gene="Rpl6"
                     /inference="alignment:Splign:2.1.0"
     exon            513..561
                     /gene="Rpl6"
                     /inference="alignment:Splign:2.1.0"
     exon            562..746
                     /gene="Rpl6"
                     /inference="alignment:Splign:2.1.0"
     exon            747..932
                     /gene="Rpl6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agatggcggg tgaaaaggcg gagaagcctg ataaaaagga gcagaaacct gcagccaaga
       61 aggctggcgg tgatgctact gccccccggg ccctgcccgc tggtgcggtc aaaaagagta
      121 gttctaaggc taaaaagctg aggaagagta agccccattg cagccggaac cctgtcctgg
      181 tgagaggaat cggcaggtat tcccgatctg ctatgtattc cagaaaggcc ttgtacaaaa
      241 ggaaatactc tgctgccaag acaaaggttg agaagaagaa gaagaaagaa aaggtccttg
      301 ctaccgtcac aaaaacagtt ggtggggaca agaacggtgg cacccgggtg gtgaagcttc
      361 gaaaaatgcc taggtattac cctactgaag acgtgcctcg gaagctgctg agccacggca
      421 agaagccctt cagccagcac gtgaggaggc tgcgctccag catcactccc gggactgtcc
      481 tgatcatcct cactgggcgc cacaggggca agagagtggt tttcctcaag cagctgggca
      541 gtggcttgct acttgtgact ggacctcttg ccctcaacag agttcctctg cgtaggacac
      601 accagaagtt tgtcatcgcc acctctacaa aagttgatat cagcaaggtt aaaattccca
      661 aacacctgac tgatgcttac ttcaagaaga agccacttcg caagcccagg catcaggagg
      721 gtgagatctt cgacacagag aaggagaaat acgaaattac agagcagcga aaggctgatc
      781 agaaagctgt ggactcgcag attttgccaa agatcaaagc tgtcccccag ctccagggct
      841 acctgcggtc tcagttctcc ctgacgaacg gcatgtaccc tcacaaactg gtgttctaat
      901 tgttaacaac ctaattaaac tgcttcataa ggaaaaaaaa aaaaaaaaaa aaaaaaaa
//
