LOCUS       NM_022510               1387 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribosomal protein L4 (Rpl4), mRNA.
ACCESSION   NM_022510
VERSION     NM_022510.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1387)
  AUTHORS   Zhang,C., Kho,Y.S., Wang,Z., Chiang,Y.T., Ng,G.K., Shaw,P.C.,
            Wang,Y. and Qi,R.Z.
  TITLE     Transmembrane and coiled-coil domain family 1 is a novel protein of
            the endoplasmic reticulum
  JOURNAL   PLoS One 9 (1), e85206 (2014)
   PUBMED   24454821
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1387)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   3  (bases 1 to 1387)
  AUTHORS   Todd,M.A. and Picketts,D.J.
  TITLE     PHF6 interacts with the nucleosome remodeling and deacetylation
            (NuRD) complex
  JOURNAL   J Proteome Res 11 (8), 4326-4337 (2012)
   PUBMED   22720776
REFERENCE   4  (bases 1 to 1387)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   5  (bases 1 to 1387)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   6  (bases 1 to 1387)
  AUTHORS   Kajikawa,S., Nakayama,H., Suzuki,M., Takashima,A., Murayama,O.,
            Nishihara,M., Takahashi,M. and Doi,K.
  TITLE     Increased expression of rat ribosomal protein L4 mRNA in
            5-azacytidine-treated PC12 cells prior to apoptosis
  JOURNAL   Biochem Biophys Res Commun 252 (1), 220-224 (1998)
   PUBMED   9813173
REFERENCE   7  (bases 1 to 1387)
  AUTHORS   Chan,Y.L., Olvera,J. and Wool,I.G.
  TITLE     The primary structures of rat ribosomal proteins L4 and L41
  JOURNAL   Biochem Biophys Res Commun 214 (3), 810-818 (1995)
   PUBMED   7575549
REFERENCE   8  (bases 1 to 1387)
  AUTHORS   Horne,Z. and Hesketh,J.
  TITLE     Immunological localization of ribosomes in striated rat muscle.
            Evidence for myofibrillar association and ontological changes in
            the subsarcolemmal:myofibrillar distribution
  JOURNAL   Biochem J 268 (1), 231-236 (1990)
   PUBMED   2188648
REFERENCE   9  (bases 1 to 1387)
  AUTHORS   Kargel,H.J., Stahl,J., Gross,B., Knespel,S., Bielka,H. and
            Saarma,M.
  TITLE     Studies on interaction of 5 S RNA with ribosomal proteins
  JOURNAL   FEBS Lett 220 (1), 126-128 (1987)
   PUBMED   3301408
REFERENCE   10 (bases 1 to 1387)
  AUTHORS   Hultin,T.
  TITLE     Selective high-efficiency cross-linking of mammalian ribosomal
            proteins with cleavable thiol-directed heterobifunctional reagents:
            identification and binding directions of major protein complexes
  JOURNAL   Biochim Biophys Acta 872 (3), 226-235 (1986)
   PUBMED   3730400
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from X82180.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: X82180.1, FQ211151.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1387
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..1387
                     /gene="Rpl4"
                     /note="ribosomal protein L4"
                     /db_xref="GeneID:64302"
                     /db_xref="RGD:619824"
     exon            1..54
                     /gene="Rpl4"
                     /inference="alignment:Splign:2.1.0"
     CDS             52..1317
                     /gene="Rpl4"
                     /note="60S ribosomal protein L4; L1; 60S ribosomal protein
                     L1"
                     /codon_start=1
                     /product="large ribosomal subunit protein uL4"
                     /protein_id="NP_071955.1"
                     /db_xref="GeneID:64302"
                     /db_xref="RGD:619824"
                     /translation="MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNL
                     RKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMF
                     APTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHCVEEVPELPLVVEDKVES
                     YKKTKEAVQLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGII
                     KAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSN
                     YNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKT
                     MRRNTILRQARNHKLRVKKLEAAAAALAAKSEKIVPEKGAGDKKPAVGKKGKKPVDAK
                     KLKKPAGKKVVTKKPAEKKPTTEEKKSAA"
     exon            55..226
                     /gene="Rpl4"
                     /inference="alignment:Splign:2.1.0"
     exon            227..333
                     /gene="Rpl4"
                     /inference="alignment:Splign:2.1.0"
     exon            334..472
                     /gene="Rpl4"
                     /inference="alignment:Splign:2.1.0"
     exon            473..597
                     /gene="Rpl4"
                     /inference="alignment:Splign:2.1.0"
     exon            598..727
                     /gene="Rpl4"
                     /inference="alignment:Splign:2.1.0"
     exon            728..884
                     /gene="Rpl4"
                     /inference="alignment:Splign:2.1.0"
     exon            885..968
                     /gene="Rpl4"
                     /inference="alignment:Splign:2.1.0"
     exon            969..1089
                     /gene="Rpl4"
                     /inference="alignment:Splign:2.1.0"
     exon            1090..1387
                     /gene="Rpl4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctgtgggag cagccgggta gagaggagcg tggccttctc ctctccccgc catggcttgt
       61 gcccgtcccc tcatatcggt gtactctgaa aagggggagt catctggcaa gaatgtcact
      121 ttgccagctg tgttcaaagc tcccattcga ccggatattg tgaactttgt tcacaccaac
      181 ttgaggaaga acaatagaca gccctatgct gtcagtgaat tagcaggtca tcagaccagt
      241 gctgagtcct ggggtactgg tagagctgtg gctcgaattc caagagttcg aggtggtggc
      301 acccaccgtt ctggccaggg tgcctttgga aacatgtgtc gtggaggccg catgtttgca
      361 ccaaccaaaa cctggcgtcg ttggcatcgc agagtgaaca caactcagaa acgatatgcc
      421 atctgttctg ccctggctgc ctcggcctta ccagctttgg tgatgtctaa aggtcactgt
      481 gttgaggaag ttcctgaact gcctttggtg gttgaagata aagttgaaag ttataagaag
      541 accaaggagg ctgttcagct gcttaagaaa cttaaagctt ggaatgacat caaaaaggtc
      601 tatgcctccc agagaatgag agctggcaag ggcaaaatga gaaaccgacg gcggatccag
      661 cgcaggggac cctgcattat ctataatgaa gataatggaa tcatcaaggc cttcagaaac
      721 atccctggta ttactctgct taatgtaagc aagctgaaca ttttgaaact tgctcctggt
      781 gggcatgtgg ggcgtttctg catttggact gaaagtgctt tccggaagtt ggatgagttg
      841 tatggcactt ggcgtaaggc tgcttccctc aagagtaact acaacctccc catgcacaag
      901 atgatgaaca cagaccttag cagaatcttg aaaagcccag agatccaaag agcccttcga
      961 gcaccacgca agaagattca tcgcagagtc ttgaagaaga atccactgaa gaatctgagg
     1021 atcatgttga agctgaaccc ttacgcaaag actatgcgta ggaacaccat tctccgccag
     1081 gctaggaatc acaaacttcg agtgaaaaag ctggaagccg cagctgctgc actggcagcc
     1141 aaatcggaga agattgttcc agagaagggg gctggagaca aaaaacctgc agtaggcaaa
     1201 aaaggaaaga agcctgtgga tgccaagaag ctgaagaagc ctgcagggaa aaaggtggtt
     1261 accaagaaac cagcagagaa gaaacctacc acagaagaaa aaaagtctgc tgcataaact
     1321 attaaaattt gttaaattcc agagagcaaa aagatacagc ctatttgaat aaatcaaaga
     1381 tgcagtg
//
