LOCUS       NM_001191589            1336 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ribosomal protein L3-like (Rpl3l), mRNA.
ACCESSION   NM_001191589 XM_213231
VERSION     NM_001191589.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1336)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   2  (bases 1 to 1336)
  AUTHORS   Odintsova,T.I., Muller,E.C., Ivanov,A.V., Egorov,T.A., Bienert,R.,
            Vladimirov,S.N., Kostka,S., Otto,A., Wittmann-Liebold,B. and
            Karpova,G.G.
  TITLE     Characterization and analysis of posttranslational modifications of
            the human large cytoplasmic ribosomal subunit proteins by mass
            spectrometry and Edman sequencing
  JOURNAL   J Protein Chem 22 (3), 249-258 (2003)
   PUBMED   12962325
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Jul 17, 2010 this sequence version replaced XM_213231.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ214717.1, FQ216295.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-39                JAXUCZ010000010.1  14258446-14258484
            40-232              JAXUCZ010000010.1  14258882-14259074
            233-401             JAXUCZ010000010.1  14263441-14263609
            402-537             JAXUCZ010000010.1  14264655-14264790
            538-724             JAXUCZ010000010.1  14266183-14266369
            725-885             JAXUCZ010000010.1  14266458-14266618
            886-987             JAXUCZ010000010.1  14266775-14266876
            988-1083            JAXUCZ010000010.1  14268292-14268387
            1084-1203           JAXUCZ010000010.1  14268580-14268699
            1204-1336           JAXUCZ010000010.1  14268857-14268989
FEATURES             Location/Qualifiers
     source          1..1336
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..1336
                     /gene="Rpl3l"
                     /note="ribosomal protein L3-like"
                     /db_xref="GeneID:287122"
                     /db_xref="RGD:1306315"
     exon            1..39
                     /gene="Rpl3l"
                     /inference="alignment:Splign:2.1.0"
     CDS             37..1260
                     /gene="Rpl3l"
                     /note="60S ribosomal protein L3-like"
                     /codon_start=1
                     /product="ribosomal protein uL3-like"
                     /protein_id="NP_001178518.1"
                     /db_xref="GeneID:287122"
                     /db_xref="RGD:1306315"
                     /translation="MSHRKFSAPRHGHLGFLPHKRSRRHRGKVKSWPRDDPSQPVHLT
                     AFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSF
                     KTIFAEHLSDECRRRFYKDWHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVI
                     RVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVID
                     VIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHH
                     RTELNKKIYRIGRGLHMEDGKMVRNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLK
                     GCIAGTKKRVITLRKSLLVHHSRRALENIELKFIDTTSKFGHGCFQTAQEKRAFMGPQ
                     KKHLEKEKPETSGNV"
     exon            40..232
                     /gene="Rpl3l"
                     /inference="alignment:Splign:2.1.0"
     exon            233..401
                     /gene="Rpl3l"
                     /inference="alignment:Splign:2.1.0"
     exon            402..537
                     /gene="Rpl3l"
                     /inference="alignment:Splign:2.1.0"
     exon            538..724
                     /gene="Rpl3l"
                     /inference="alignment:Splign:2.1.0"
     exon            725..885
                     /gene="Rpl3l"
                     /inference="alignment:Splign:2.1.0"
     exon            886..987
                     /gene="Rpl3l"
                     /inference="alignment:Splign:2.1.0"
     exon            988..1083
                     /gene="Rpl3l"
                     /inference="alignment:Splign:2.1.0"
     exon            1084..1203
                     /gene="Rpl3l"
                     /inference="alignment:Splign:2.1.0"
     exon            1204..1336
                     /gene="Rpl3l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtggggaggt cccttcctaa cctgcaggga tcgtccatgt ctcaccggaa gttctctgct
       61 cctcgacatg gacacctggg cttcctgccc cacaagagga gccggcggca ccggggcaag
      121 gtgaagagct ggcctcgcga tgaccccagc cagcccgtgc acctcacagc cttcttgggc
      181 tataaggccg gcatgaccca cacacttcgc gaagtgcacc gacctggact caaaatttct
      241 aagcgagagg aggtagaagc tgtgacaatt gtggagacgc ccccactggt ggtggtgggc
      301 gtggtgggct acgtggccac tccgaggggg ctgcggagct tcaagaccat ctttgccgaa
      361 cacctcagcg atgagtgtcg ccggagattc tacaaggact ggcacaagag taagaagaaa
      421 gcctttacca aagcctgcaa gaggtggcgg gacgccgatg gcaagaagca gctgcagaaa
      481 gactttgctg ccatgaagaa atactgcaag gtcattcggg tcatcgtcca cacccagatg
      541 aagctgctgc cctttaggca gaagaaggcc cacatcatgg agattcagct gaatggtggc
      601 actgtggctg agaaggtggc ctgggctcag gcacggttgg agaagcaggt gcctgtacac
      661 agtgtgttca gccagagtga ggttattgat gtcattgctg tcacgaaggg ccggggtgtt
      721 aaaggggtca ccagtcgctg gcataccaag aagcttccta ggaagaccca caaaggcctg
      781 cgcaaggtgg cctgtattgg tgcctggcac cctgcccgag taggctgctc catcgcccgg
      841 gctgggcaga agggttacca ccaccgtaca gagctgaaca agaagatcta ccgcattggc
      901 cgggggctgc acatggaaga cgggaagatg gtcagaaaca acgcatctac cagctatgac
      961 gtaaccgaca agtctatcac acccctgggt ggcttccccc actacgggga agtgaacaat
     1021 gacttcgtca tgttaaaagg ctgcattgct ggcaccaaga agagagtgat cacactgagg
     1081 aagtccctac tagtgcacca cagccgcagg gccctggaga atattgagct caagttcatt
     1141 gacaccactt ctaagtttgg ccacggatgc ttccagacag cgcaggagaa gagggccttc
     1201 atgggccccc aaaagaaaca tctggagaaa gagaagccgg agacctcggg aaacgtctaa
     1261 gatgcctgga atggagcaca cctgggatgg agtgcttcct gtcctttttg ttcaataaag
     1321 tcctgaggaa actcta
//
