LOCUS       NM_012875                376 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ribosomal protein L39 (Rpl39), mRNA.
ACCESSION   NM_012875
VERSION     NM_012875.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 376)
  AUTHORS   Behrmann,E., Loerke,J., Budkevich,T.V., Yamamoto,K., Schmidt,A.,
            Penczek,P.A., Vos,M.R., Burger,J., Mielke,T., Scheerer,P. and
            Spahn,C.M.
  TITLE     Structural snapshots of actively translating human ribosomes
  JOURNAL   Cell 161 (4), 845-857 (2015)
   PUBMED   25957688
REFERENCE   2  (bases 1 to 376)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   3  (bases 1 to 376)
  AUTHORS   Weber,M.J.
  TITLE     Mammalian small nucleolar RNAs are mobile genetic elements
  JOURNAL   PLoS Genet 2 (12), e205 (2006)
   PUBMED   17154719
  REMARK    Erratum:[PLoS Genet. 2007 Feb;3(2):e36]
REFERENCE   4  (bases 1 to 376)
  AUTHORS   Odintsova,T.I., Muller,E.C., Ivanov,A.V., Egorov,T.A., Bienert,R.,
            Vladimirov,S.N., Kostka,S., Otto,A., Wittmann-Liebold,B. and
            Karpova,G.G.
  TITLE     Characterization and analysis of posttranslational modifications of
            the human large cytoplasmic ribosomal subunit proteins by mass
            spectrometry and Edman sequencing
  JOURNAL   J Protein Chem 22 (3), 249-258 (2003)
   PUBMED   12962325
REFERENCE   5  (bases 1 to 376)
  AUTHORS   Tollin,M., Bergman,P., Svenberg,T., Jornvall,H., Gudmundsson,G.H.
            and Agerberth,B.
  TITLE     Antimicrobial peptides in the first line defence of human colon
            mucosa
  JOURNAL   Peptides 24 (4), 523-530 (2003)
   PUBMED   12860195
REFERENCE   6  (bases 1 to 376)
  AUTHORS   Chan,Y.L., Olvera,J. and Wool,I.G.
  TITLE     The primary structures of rat ribosomal proteins: the
            characterization of the cDNAs for S21 and L39, corrections in the
            sequences of L7 and L18a, and the identification of L33
  JOURNAL   Biochem Biophys Res Commun 213 (3), 1042-1050 (1995)
   PUBMED   7654221
REFERENCE   7  (bases 1 to 376)
  AUTHORS   Lin,A., McNally,J. and Wool,I.G.
  TITLE     The primary structure of rat liver ribosomal protein L39
  JOURNAL   J Biol Chem 259 (1), 487-490 (1984)
   PUBMED   6706949
REFERENCE   8  (bases 1 to 376)
  AUTHORS   Tsurugi,K., Collatz,E., Wool,E.G. and Lin,A.
  TITLE     Isolation of eukaryotic ribosomal proteins. Purification and
            characterization of the 60 S ribosomal subunit proteins L4, L5, L7,
            L9, L11, L12, L13, L21, L22, L23, L26, L27, L30, L33, L35', L37,
            and L39
  JOURNAL   J Biol Chem 251 (24), 7940-7946 (1976)
   PUBMED   1002715
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On Jul 15, 2022 this sequence version replaced NM_012875.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ222485.1, FQ222523.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760475, SAMN12840115
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-74                JAXUCZ010000021.1  121195823-121195896 c
            75-178              JAXUCZ010000021.1  121194820-121194923 c
            179-376             JAXUCZ010000021.1  121192901-121193098 c
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq35"
     gene            1..376
                     /gene="Rpl39"
                     /note="ribosomal protein L39"
                     /db_xref="GeneID:25347"
                     /db_xref="RGD:3593"
     exon            1..74
                     /gene="Rpl39"
                     /inference="alignment:Splign:2.1.0"
     CDS             72..227
                     /gene="Rpl39"
                     /note="60S ribosomal protein L39"
                     /codon_start=1
                     /product="large ribosomal subunit protein eL39"
                     /protein_id="NP_037007.1"
                     /db_xref="GeneID:25347"
                     /db_xref="RGD:3593"
                     /translation="MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHW
                     RRTKLGL"
     exon            75..178
                     /gene="Rpl39"
                     /inference="alignment:Splign:2.1.0"
     exon            179..376
                     /gene="Rpl39"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cttccggcct gtcctttctc ttctcctttc ctccgccatc gtgcgctctg cgcctgattc
       61 agatcctcgc catgtcttct cacaagactt tcagaatcaa gcgattcctg gcaaagaaac
      121 aaaagcaaaa tcgtcctatt cctcaatgga ttcggatgaa aactggtaac aaaatcaggt
      181 acaactctaa gagaagacac tggaggagaa cgaagctggg tctataagga gtcacactac
      241 ggccagactg aggatttcta ctgaatcacc gtcatcgatc agtccgacca gatggatttc
      301 aacattttta acctagagat ttacttgtgt ctgaactaat ttgtccagta ataaaattta
      361 gaacctttca aactga
//
