LOCUS       NM_001077592             330 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus ribosomal protein L38 (Rpl38), mRNA.
ACCESSION   NM_001077592 XM_001071627 XM_001071665
VERSION     NM_001077592.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 330)
  AUTHORS   Behrmann,E., Loerke,J., Budkevich,T.V., Yamamoto,K., Schmidt,A.,
            Penczek,P.A., Vos,M.R., Burger,J., Mielke,T., Scheerer,P. and
            Spahn,C.M.
  TITLE     Structural snapshots of actively translating human ribosomes
  JOURNAL   Cell 161 (4), 845-857 (2015)
   PUBMED   25957688
REFERENCE   2  (bases 1 to 330)
  AUTHORS   Kondrashov,N., Pusic,A., Stumpf,C.R., Shimizu,K., Hsieh,A.C.,
            Ishijima,J., Shiroishi,T. and Barna,M.
  TITLE     Ribosome-mediated specificity in Hox mRNA translation and
            vertebrate tissue patterning
  JOURNAL   Cell 145 (3), 383-397 (2011)
   PUBMED   21529712
REFERENCE   3  (bases 1 to 330)
  AUTHORS   Kuo,J.C., Han,X., Hsiao,C.T., Yates,J.R. 3rd and Waterman,C.M.
  TITLE     Analysis of the myosin-II-responsive focal adhesion proteome
            reveals a role for beta-Pix in negative regulation of focal
            adhesion maturation
  JOURNAL   Nat Cell Biol 13 (4), 383-393 (2011)
   PUBMED   21423176
REFERENCE   4  (bases 1 to 330)
  AUTHORS   Noben-Trauth,K. and Latoche,J.R.
  TITLE     Ectopic mineralization in the middle ear and chronic otitis media
            with effusion caused by RPL38 deficiency in the Tail-short (Ts)
            mouse
  JOURNAL   J Biol Chem 286 (4), 3079-3093 (2011)
   PUBMED   21062742
REFERENCE   5  (bases 1 to 330)
  AUTHORS   Bayes,A., van de Lagemaat,L.N., Collins,M.O., Croning,M.D.,
            Whittle,I.R., Choudhary,J.S. and Grant,S.G.
  TITLE     Characterization of the proteome, diseases and evolution of the
            human postsynaptic density
  JOURNAL   Nat Neurosci 14 (1), 19-21 (2011)
   PUBMED   21170055
REFERENCE   6  (bases 1 to 330)
  AUTHORS   Trinidad,J.C., Specht,C.G., Thalhammer,A., Schoepfer,R. and
            Burlingame,A.L.
  TITLE     Comprehensive identification of phosphorylation sites in
            postsynaptic density preparations
  JOURNAL   Mol Cell Proteomics 5 (5), 914-922 (2006)
   PUBMED   16452087
REFERENCE   7  (bases 1 to 330)
  AUTHORS   Odintsova,T.I., Muller,E.C., Ivanov,A.V., Egorov,T.A., Bienert,R.,
            Vladimirov,S.N., Kostka,S., Otto,A., Wittmann-Liebold,B. and
            Karpova,G.G.
  TITLE     Characterization and analysis of posttranslational modifications of
            the human large cytoplasmic ribosomal subunit proteins by mass
            spectrometry and Edman sequencing
  JOURNAL   J Protein Chem 22 (3), 249-258 (2003)
   PUBMED   12962325
REFERENCE   8  (bases 1 to 330)
  AUTHORS   Kuwano,Y., Olvera,J. and Wool,I.G.
  TITLE     The primary structure of rat ribosomal protein L38
  JOURNAL   Biochem Biophys Res Commun 175 (2), 551-555 (1991)
   PUBMED   1840484
REFERENCE   9  (bases 1 to 330)
  AUTHORS   Tsurugi,K., Collatz,E., Todokoro,K., Ulbrich,N., Lightfoot,H.N. and
            Wool,I.G.
  TITLE     Isolation of eukaryotic ribosomal proteins. Purification and
            characterization of the 60 S ribosomal subunit proteins La, Lb, Lf,
            P1, P2, L13', L14, L18', L20, and L38
  JOURNAL   J Biol Chem 253 (3), 946-955 (1978)
   PUBMED   621213
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC101933.1.
            
            On or before Nov 9, 2006 this sequence version replaced
            XM_001071627.1, XM_001071665.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC101933.1, CB567125.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.1"
     gene            1..330
                     /gene="Rpl38"
                     /note="ribosomal protein L38"
                     /db_xref="GeneID:689284"
                     /db_xref="RGD:1305573"
     exon            1..20
                     /gene="Rpl38"
                     /inference="alignment:Splign:2.1.0"
     exon            21..54
                     /gene="Rpl38"
                     /inference="alignment:Splign:2.1.0"
     CDS             52..264
                     /gene="Rpl38"
                     /note="60S ribosomal protein L38"
                     /codon_start=1
                     /product="large ribosomal subunit protein eL38"
                     /protein_id="NP_001071060.1"
                     /db_xref="GeneID:689284"
                     /db_xref="RGD:1305573"
                     /translation="MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYT
                     LVITDKEKAEKLKQSLPPGLAVKELK"
     exon            55..115
                     /gene="Rpl38"
                     /inference="alignment:Splign:2.1.0"
     exon            116..238
                     /gene="Rpl38"
                     /inference="alignment:Splign:2.1.0"
     exon            239..305
                     /gene="Rpl38"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttgttcggt gctcgctcct gtgctgacgc cagagccgag cgcccgtcgc catgcctcgg
       61 aaaattgagg aaatcaagga ctttctactc acagcccggc ggaaggatgc caaatctgtc
      121 aagatcaaga aaaacaagga taatgtaaag ttcaaggtcc gctgtagcag gtacctctac
      181 accctggtta tcacagacaa ggagaaggcg gagaagctga agcagtccct gcccccaggt
      241 ttggcagtga aggagctgaa atgaacagga cctctgcatg tgactattaa aaaccctgaa
      301 aagtcaaaaa aaaaaaaaaa aaaaaaaaaa
//
