LOCUS       NM_021264                449 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus ribosomal protein L35A (Rpl35a), mRNA.
ACCESSION   NM_021264 XM_002727896
VERSION     NM_021264.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 449)
  AUTHORS   Zanivan,S., Maione,F., Hein,M.Y., Hernandez-Fernaud,J.R.,
            Ostasiewicz,P., Giraudo,E. and Mann,M.
  TITLE     SILAC-based proteomics of human primary endothelial cell
            morphogenesis unveils tumor angiogenic markers
  JOURNAL   Mol Cell Proteomics 12 (12), 3599-3611 (2013)
   PUBMED   23979707
REFERENCE   2  (bases 1 to 449)
  AUTHORS   Quarello,P., Garelli,E., Brusco,A., Carando,A., Mancini,C.,
            Pappi,P., Vinti,L., Svahn,J., Dianzani,I. and Ramenghi,U.
  TITLE     High frequency of ribosomal protein gene deletions in Italian
            Diamond-Blackfan anemia patients detected by multiplex
            ligation-dependent probe amplification assay
  JOURNAL   Haematologica 97 (12), 1813-1817 (2012)
   PUBMED   22689679
REFERENCE   3  (bases 1 to 449)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   4  (bases 1 to 449)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   5  (bases 1 to 449)
  AUTHORS   Buschow,S.I., van Balkom,B.W., Aalberts,M., Heck,A.J., Wauben,M.
            and Stoorvogel,W.
  TITLE     MHC class II-associated proteins in B-cell exosomes and potential
            functional implications for exosome biogenesis
  JOURNAL   Immunol Cell Biol 88 (8), 851-856 (2010)
   PUBMED   20458337
REFERENCE   6  (bases 1 to 449)
  AUTHORS   Kroes,R.A., Jastrow,A., McLone,M.G., Yamamoto,H., Colley,P.,
            Kersey,D.S., Yong,V.W., Mkrdichian,E., Cerullo,L., Leestma,J. and
            Moskal,J.R.
  TITLE     The identification of novel therapeutic targets for the treatment
            of malignant brain tumors
  JOURNAL   Cancer Lett 156 (2), 191-198 (2000)
   PUBMED   10880769
REFERENCE   7  (bases 1 to 449)
  AUTHORS   Tanaka,T., Wakasugi,K., Kuwano,Y., Ishikawa,K. and Ogata,K.
  TITLE     Nucleotide sequence of cloned cDNA specific for rat ribosomal
            protein L35a
  JOURNAL   Eur J Biochem 154 (3), 523-527 (1986)
   PUBMED   3753935
REFERENCE   8  (bases 1 to 449)
  AUTHORS   Ulbrich,N., Wool,I.G., Ackerman,E. and Sigler,P.B.
  TITLE     The identification by affinity chromatography of the rat liver
            ribosomal proteins that bind to elongator and initiator transfer
            ribonucleic acids
  JOURNAL   J Biol Chem 255 (14), 7010-7019 (1980)
   PUBMED   7391064
REFERENCE   9  (bases 1 to 449)
  AUTHORS   Ulbrich,N., Lin,A., Todokoro,K. and Wool,I.G.
  TITLE     Identification by affinity chromatography of the rat liver
            ribosomal proteins that bind to Escherichia coli 5 S ribosomal
            ribonucleic acid
  JOURNAL   J Biol Chem 255 (2), 797-801 (1980)
   PUBMED   6985899
REFERENCE   10 (bases 1 to 449)
  AUTHORS   Tsurugi,K., Collatz,E., Wool,E.G. and Lin,A.
  TITLE     Isolation of eukaryotic ribosomal proteins. Purification and
            characterization of the 60 S ribosomal subunit proteins L4, L5, L7,
            L9, L11, L12, L13, L21, L22, L23, L26, L27, L30, L33, L35', L37,
            and L39
  JOURNAL   J Biol Chem 251 (24), 7940-7946 (1976)
   PUBMED   1002715
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000011.1.
            
            On or before Jul 18, 2022 this sequence version replaced
            XM_002727896.6, NM_021264.3.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ217774.1, FQ221010.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-29                JAXUCZ010000011.1  81234993-81235021   c
            30-74               JAXUCZ010000011.1  81234340-81234384   c
            75-227              JAXUCZ010000011.1  81233995-81234147   c
            228-372             JAXUCZ010000011.1  81232557-81232701   c
            373-449             JAXUCZ010000011.1  81231114-81231190   c
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q22"
     gene            1..449
                     /gene="Rpl35a"
                     /gene_synonym="Rpl35al1"
                     /note="ribosomal protein L35A"
                     /db_xref="GeneID:57809"
                     /db_xref="RGD:2323795"
     exon            1..29
                     /gene="Rpl35a"
                     /gene_synonym="Rpl35al1"
                     /inference="alignment:Splign:2.1.0"
     exon            30..74
                     /gene="Rpl35a"
                     /gene_synonym="Rpl35al1"
                     /inference="alignment:Splign:2.1.0"
     CDS             64..396
                     /gene="Rpl35a"
                     /gene_synonym="Rpl35al1"
                     /note="60S ribosomal protein L35a; ribosomal protein
                     L35a-like; ribosomal protein L35a-like 1"
                     /codon_start=1
                     /product="large ribosomal subunit protein eL33"
                     /protein_id="NP_067087.1"
                     /db_xref="GeneID:57809"
                     /db_xref="RGD:2323795"
                     /translation="MSGRLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLG
                     KRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIR
                     VMLYPSRI"
     exon            75..227
                     /gene="Rpl35a"
                     /gene_synonym="Rpl35al1"
                     /inference="alignment:Splign:2.1.0"
     exon            228..372
                     /gene="Rpl35a"
                     /gene_synonym="Rpl35al1"
                     /inference="alignment:Splign:2.1.0"
     exon            373..449
                     /gene="Rpl35a"
                     /gene_synonym="Rpl35al1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctctttccgc catcttggcg tctttggagg cctgctggga acaggacttc taaaaaaaca
       61 agtatgtctg gaaggctgtg gtgcaaggcc atttttgctg gctacaagcg aggcctccgg
      121 aaccaaagag agcacacggc tcttcttaaa attgaaggtg tttatgcccg agatgaaact
      181 gagttctact taggcaagag gtgtgcttat gtgtacaaag caaaaaacaa tacagtgact
      241 cctggaggca aaccaaacaa aaccagagtg atctggggaa aagtaactcg ggcccatgga
      301 aacagtggca tggttcgtgc caaattccga agcaaccttc ctgcaaaggc cattggacac
      361 agaatccgtg tgatgctgta cccatcccgg atttaaacta atggagagta aataaataaa
      421 agtagatttg tgctcttgta tttttttca
//
