LOCUS       NM_022506                998 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribosomal protein L31 (Rpl31), mRNA.
ACCESSION   NM_022506
VERSION     NM_022506.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 998)
  AUTHORS   Behrmann,E., Loerke,J., Budkevich,T.V., Yamamoto,K., Schmidt,A.,
            Penczek,P.A., Vos,M.R., Burger,J., Mielke,T., Scheerer,P. and
            Spahn,C.M.
  TITLE     Structural snapshots of actively translating human ribosomes
  JOURNAL   Cell 161 (4), 845-857 (2015)
   PUBMED   25957688
REFERENCE   2  (bases 1 to 998)
  AUTHORS   Voorhees,R.M., Fernandez,I.S., Scheres,S.H. and Hegde,R.S.
  TITLE     Structure of the mammalian ribosome-Sec61 complex to 3.4 A
            resolution
  JOURNAL   Cell 157 (7), 1632-1643 (2014)
   PUBMED   24930395
REFERENCE   3  (bases 1 to 998)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   4  (bases 1 to 998)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   5  (bases 1 to 998)
  AUTHORS   Kuo,J.C., Han,X., Hsiao,C.T., Yates,J.R. 3rd and Waterman,C.M.
  TITLE     Analysis of the myosin-II-responsive focal adhesion proteome
            reveals a role for beta-Pix in negative regulation of focal
            adhesion maturation
  JOURNAL   Nat Cell Biol 13 (4), 383-393 (2011)
   PUBMED   21423176
REFERENCE   6  (bases 1 to 998)
  AUTHORS   Trinidad,J.C., Specht,C.G., Thalhammer,A., Schoepfer,R. and
            Burlingame,A.L.
  TITLE     Comprehensive identification of phosphorylation sites in
            postsynaptic density preparations
  JOURNAL   Mol Cell Proteomics 5 (5), 914-922 (2006)
   PUBMED   16452087
REFERENCE   7  (bases 1 to 998)
  AUTHORS   Odintsova,T.I., Muller,E.C., Ivanov,A.V., Egorov,T.A., Bienert,R.,
            Vladimirov,S.N., Kostka,S., Otto,A., Wittmann-Liebold,B. and
            Karpova,G.G.
  TITLE     Characterization and analysis of posttranslational modifications of
            the human large cytoplasmic ribosomal subunit proteins by mass
            spectrometry and Edman sequencing
  JOURNAL   J Protein Chem 22 (3), 249-258 (2003)
   PUBMED   12962325
REFERENCE   8  (bases 1 to 998)
  AUTHORS   Quaye,I.K., Toku,S. and Tanaka,T.
  TITLE     Sequence requirement for nucleolar localization of rat ribosomal
            protein L31
  JOURNAL   Eur J Cell Biol 69 (2), 151-155 (1996)
   PUBMED   8907615
REFERENCE   9  (bases 1 to 998)
  AUTHORS   Tanaka,T., Kuwano,Y., Kuzumaki,T., Ishikawa,K. and Ogata,K.
  TITLE     Nucleotide sequence of cloned cDNA specific for rat ribosomal
            protein L31
  JOURNAL   Eur J Biochem 162 (1), 45-48 (1987)
   PUBMED   3816785
REFERENCE   10 (bases 1 to 998)
  AUTHORS   Tsurugi,K., Collatz,E., Todokoro,K. and Wool,I.G.
  TITLE     Isolation of eukaryotic ribosomal proteins. Purification and
            characterization of 60 S ribosomal subunit proteins L3, L6, L7',
            L8, L10, L15, L17, L18, L19, L23', L25, L27', L28, L29, L31, L32,
            L34, L35, L36, L36', and L37'
  JOURNAL   J Biol Chem 252 (11), 3961-3969 (1977)
   PUBMED   863909
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Mar 5, 2022 this sequence version replaced NM_022506.3.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ226734.1, CB583823.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-29                JAXUCZ010000009.1  49143111-49143139
            30-136              JAXUCZ010000009.1  49143317-49143423
            137-262             JAXUCZ010000009.1  49145257-49145382
            263-375             JAXUCZ010000009.1  49146216-49146328
            376-998             JAXUCZ010000009.1  49146533-49147155
FEATURES             Location/Qualifiers
     source          1..998
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q22"
     gene            1..998
                     /gene="Rpl31"
                     /note="ribosomal protein L31"
                     /db_xref="GeneID:64298"
                     /db_xref="RGD:621202"
     exon            1..29
                     /gene="Rpl31"
                     /inference="alignment:Splign:2.1.0"
     CDS             30..407
                     /gene="Rpl31"
                     /note="60S ribosomal protein L31"
                     /codon_start=1
                     /product="large ribosomal subunit protein eL31"
                     /protein_id="NP_071951.1"
                     /db_xref="GeneID:64298"
                     /db_xref="RGD:621202"
                     /translation="MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPR
                     ALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKL
                     YTLVTYVPVTTFKNLQTVNVDEN"
     exon            30..136
                     /gene="Rpl31"
                     /inference="alignment:Splign:2.1.0"
     exon            137..262
                     /gene="Rpl31"
                     /inference="alignment:Splign:2.1.0"
     exon            263..375
                     /gene="Rpl31"
                     /inference="alignment:Splign:2.1.0"
     exon            376..998
                     /gene="Rpl31"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctttccttt ccaacttggg cccggcagaa tggctcccgc aaagaagggt ggcgagaaga
       61 agaagggccg ttctgccatc aacgaggtgg tgacccgaga atacaccatc aacattcaca
      121 aacgcatcca tggagtgggc ttcaagaagc gtgctcctcg ggcactcaaa gaaattcgga
      181 aatttgccat gaaggagatg ggaactccag atgtgcgcat agacaccagg ctcaataaag
      241 ccgtctgggc caaaggaata aggaatgttc cgtaccgcat ccgagtacgt ttgtccagaa
      301 agcgtaatga ggatgaggat tcaccaaaca agctctacac actggtaact tacgtgcctg
      361 ttaccacatt caaaaatcta cagacggtca atgtggatga gaactaactg ctgaatgtca
      421 aataaagtta cagaattgcc tccaggtttt gctttttctt tttgttgtct gccccataag
      481 tggaattttt aggtctaagg tttattttgt tggaaattaa tctgagaagc tctgttctgg
      541 acacacagga aattggaagt atgtgaaaca ttcttttcac agaagtcagt gtattagttg
      601 gggttgtggg ggtgtttttg tttgtttttg aggggttact ctgtggtggt gctgcttgtt
      661 ctgtagacta ggttggcctg gaactcagaa ttgacctgcc ttttcctccc tagtgttgca
      721 attaaatgtg tgccactgtg tatgtttgtg gctttaacta caaagctgag gtgttatata
      781 tgaggtaaag attgaggtta taacttgagt gtgctgaatt aatttgttgt gtgggtccca
      841 ggaattgaac cagagttgtc gaccctggct ttccagtcat ctttgccaac cagtctattt
      901 cattgctgga atgtgctgtg tttccttaag atggcatttt gaaagcatca gtacaaaaag
      961 aacgattttt attaaaaacc ttgggggcca acattgaa
//
