LOCUS       NM_022697               1565 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ribosomal protein L28 (Rpl28), mRNA.
ACCESSION   NM_022697
VERSION     NM_022697.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1565)
  AUTHORS   Ivatt,R.M., Sanchez-Martinez,A., Godena,V.K., Brown,S., Ziviani,E.
            and Whitworth,A.J.
  TITLE     Genome-wide RNAi screen identifies the Parkinson disease GWAS risk
            locus SREBF1 as a regulator of mitophagy
  JOURNAL   Proc Natl Acad Sci U S A 111 (23), 8494-8499 (2014)
   PUBMED   24912190
REFERENCE   2  (bases 1 to 1565)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   3  (bases 1 to 1565)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 1565)
  AUTHORS   Buschow,S.I., van Balkom,B.W., Aalberts,M., Heck,A.J., Wauben,M.
            and Stoorvogel,W.
  TITLE     MHC class II-associated proteins in B-cell exosomes and potential
            functional implications for exosome biogenesis
  JOURNAL   Immunol Cell Biol 88 (8), 851-856 (2010)
   PUBMED   20458337
REFERENCE   5  (bases 1 to 1565)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   6  (bases 1 to 1565)
  AUTHORS   Zhang,F., Liu,C.L. and Hu,B.R.
  TITLE     Irreversible aggregation of protein synthesis machinery after focal
            brain ischemia
  JOURNAL   J Neurochem 98 (1), 102-112 (2006)
   PUBMED   16805800
REFERENCE   7  (bases 1 to 1565)
  AUTHORS   Villace,P., Marion,R.M. and Ortin,J.
  TITLE     The composition of Staufen-containing RNA granules from human cells
            indicates their role in the regulated transport and translation of
            messenger RNAs
  JOURNAL   Nucleic Acids Res 32 (8), 2411-2420 (2004)
   PUBMED   15121898
  REMARK    Publication Status: Online-Only
REFERENCE   8  (bases 1 to 1565)
  AUTHORS   Odintsova,T.I., Muller,E.C., Ivanov,A.V., Egorov,T.A., Bienert,R.,
            Vladimirov,S.N., Kostka,S., Otto,A., Wittmann-Liebold,B. and
            Karpova,G.G.
  TITLE     Characterization and analysis of posttranslational modifications of
            the human large cytoplasmic ribosomal subunit proteins by mass
            spectrometry and Edman sequencing
  JOURNAL   J Protein Chem 22 (3), 249-258 (2003)
   PUBMED   12962325
REFERENCE   9  (bases 1 to 1565)
  AUTHORS   Wool,I.G., Chan,Y.L., Paz,V. and Olvera,J.
  TITLE     The primary structure of rat ribosomal proteins: the amino acid
            sequences of L27a and L28 and corrections in the sequences of S4
            and S12
  JOURNAL   Biochim Biophys Acta 1050 (1-3), 69-73 (1990)
   PUBMED   2207170
REFERENCE   10 (bases 1 to 1565)
  AUTHORS   Marion,M.J. and Marion,C.
  TITLE     Localization of ribosomal proteins on the surface of mammalian 60S
            ribosomal subunits by means of immobilized enzymes. Correlation
            with chemical cross-linking data
  JOURNAL   Biochem Biophys Res Commun 149 (3), 1077-1083 (1987)
   PUBMED   3426607
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Nov 30, 2020 this sequence version replaced NM_022697.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ212339.1, FQ224137.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840107, SAMN12840116
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-36                JAXUCZ010000001.1  78083497-78083532   c
            37-125              JAXUCZ010000001.1  78083092-78083180   c
            126-249             JAXUCZ010000001.1  78082886-78083009   c
            250-368             JAXUCZ010000001.1  78082350-78082468   c
            369-1565            JAXUCZ010000001.1  78080945-78082141   c
FEATURES             Location/Qualifiers
     source          1..1565
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..1565
                     /gene="Rpl28"
                     /note="ribosomal protein L28"
                     /db_xref="GeneID:64638"
                     /db_xref="RGD:621193"
     exon            1..36
                     /gene="Rpl28"
                     /inference="alignment:Splign:2.1.0"
     exon            37..125
                     /gene="Rpl28"
                     /inference="alignment:Splign:2.1.0"
     CDS             45..458
                     /gene="Rpl28"
                     /EC_number="3.6.5.3"
                     /note="60S ribosomal protein L28"
                     /codon_start=1
                     /product="large ribosomal subunit protein eL28"
                     /protein_id="NP_073188.2"
                     /db_xref="GeneID:64638"
                     /db_xref="RGD:621193"
                     /translation="MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLI
                     HRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKY
                     RPDLRMAAIRRASAILRSQKPVVVKRKRTRPTKSS"
     exon            126..249
                     /gene="Rpl28"
                     /inference="alignment:Splign:2.1.0"
     exon            250..368
                     /gene="Rpl28"
                     /inference="alignment:Splign:2.1.0"
     exon            369..1565
                     /gene="Rpl28"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctttctttcc gtctccggcc gccgcaggga gaggagtcgc cgccatgtcc gcgcatctgc
       61 aatggatggt cgttcggaac tgctccagtt tcttgatcaa gaggaataag cagacgtaca
      121 gcacggagcc caataatctg aaggcccgaa actccttccg ctacaacggg ctaattcacc
      181 gcaagacggt cggagtggag cctgcggctg atggcaaagg ggtcgtggtg gttatgaaac
      241 gcagatccgg tcagcgaaaa cctgccactt cctacgtgag gaccaccatc aacaagaatg
      301 ctcgggctac cctcagcagc atcaggcaca tgatccgaaa aaacaagtac cgccctgatc
      361 tgcgtatggc ggccatccgc agagccagtg ccatccttcg aagccagaag cctgtggtgg
      421 tgaagaggaa acggacccgc cccaccaaga gctcctgagc cccacacccc agaagcaata
      481 aagagtccac tgatttgttc gaccacctcc tttaggcctc ctgttctgtg gctcattgag
      541 ctgtggccct gcgtttgtct ttagttgtgc catcaaaact cctcttgtta ggaacttgtt
      601 catctgaagt gggggttgtc aaggctagac actcggtgca gagcatctgt ctaaatgctt
      661 cctatgttgt gagtatctaa agagttagtt accagcctgg aaggatatag gctgaagagc
      721 cattcacagg gccatctagg caccaacagg agtgaaatca gattgggctg agggttgatt
      781 tcctgtagaa acaggagtga gggcaaatga ttacagggtt cttagcagct gatagtgtca
      841 gataccctga gcccctctgc ctgagcttga ggctgtctta ccaggtctca gtccactgac
      901 ccagataggc cccgctcttg agttgacatg cctcctaata agaggagaat gttaatacaa
      961 aggtttcaga gtgaagtcct tagtgaaagt atgttctatt catctgatgt gtaaaacagt
     1021 gacaatccta aatgtcacat tcggggtggg gtgggggtgt cagctaggag ttcatagtgc
     1081 agcaatagag ttttagtgtg tgttgctaat cctgaaaaat gtcaacaaag tctagttttt
     1141 accaaatgtt ttgtaatctc aacattttgg taggctgaag caggtgaata tttaaggcca
     1201 gcctggttta catagcaact ctgaggatac ccaggggtat agagatgacc ctgcctcaaa
     1261 aataagccat tgtaagtcta tctggattag tgggtgacac aagtacacag gtgtactgag
     1321 gtattgggcc atttcttgcc ccttccagcc agtattagct atcactgaca tgacgaacgt
     1381 gagtgagcct tgaatgcaaa atagtacacc atttttacca gagctttgtc tctgctacac
     1441 aactcaggcc aaagagctgc ctgagtcctt ttggggactg cttgagcccc ctcactggaa
     1501 catttgactt ttaacacagc ctcttctggt tttccccagt gcaaatgaag gatggtaaga
     1561 ttgct
//
