LOCUS       NM_001106290            1057 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus ribosomal protein L27A (Rpl27a), mRNA.
ACCESSION   NM_001106290 XM_001077420 XM_215041
VERSION     NM_001106290.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1057)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   2  (bases 1 to 1057)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 1057)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   4  (bases 1 to 1057)
  AUTHORS   Odintsova,T.I., Muller,E.C., Ivanov,A.V., Egorov,T.A., Bienert,R.,
            Vladimirov,S.N., Kostka,S., Otto,A., Wittmann-Liebold,B. and
            Karpova,G.G.
  TITLE     Characterization and analysis of posttranslational modifications of
            the human large cytoplasmic ribosomal subunit proteins by mass
            spectrometry and Edman sequencing
  JOURNAL   J Protein Chem 22 (3), 249-258 (2003)
   PUBMED   12962325
REFERENCE   5  (bases 1 to 1057)
  AUTHORS   Wool,I.G., Chan,Y.L., Paz,V. and Olvera,J.
  TITLE     The primary structure of rat ribosomal proteins: the amino acid
            sequences of L27a and L28 and corrections in the sequences of S4
            and S12
  JOURNAL   Biochim Biophys Acta 1050 (1-3), 69-73 (1990)
   PUBMED   2207170
REFERENCE   6  (bases 1 to 1057)
  AUTHORS   Fleming,G., Belhumeur,P., Skup,D. and Fried,H.M.
  TITLE     Functional substitution of mouse ribosomal protein L27' for yeast
            ribosomal protein L29 in yeast ribosomes
  JOURNAL   Proc Natl Acad Sci U S A 86 (1), 217-221 (1989)
   PUBMED   2643099
REFERENCE   7  (bases 1 to 1057)
  AUTHORS   Tsurugi,K., Collatz,E., Todokoro,K. and Wool,I.G.
  TITLE     Isolation of eukaryotic ribosomal proteins. Purification and
            characterization of 60 S ribosomal subunit proteins L3, L6, L7',
            L8, L10, L15, L17, L18, L19, L23', L25, L27', L28, L29, L31, L32,
            L34, L35, L36, L36', and L37'
  JOURNAL   J Biol Chem 252 (11), 3961-3969 (1977)
   PUBMED   863909
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473956.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_215041.4, XM_001077420.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CB313343.1, FQ144030.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1057
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q33"
     gene            1..1057
                     /gene="Rpl27a"
                     /note="ribosomal protein L27A"
                     /db_xref="GeneID:293418"
                     /db_xref="RGD:1309771"
     exon            1..31
                     /gene="Rpl27a"
                     /inference="alignment:Splign:2.1.0"
     CDS             29..475
                     /gene="Rpl27a"
                     /EC_number="3.6.5.3"
                     /note="60S ribosomal protein L27a"
                     /codon_start=1
                     /product="large ribosomal subunit protein uL15"
                     /protein_id="NP_001099760.1"
                     /db_xref="GeneID:293418"
                     /db_xref="RGD:1309771"
                     /translation="MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRIN
                     FDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIID
                     VVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA"
     exon            32..95
                     /gene="Rpl27a"
                     /inference="alignment:Splign:2.1.0"
     exon            96..171
                     /gene="Rpl27a"
                     /inference="alignment:Splign:2.1.0"
     exon            172..346
                     /gene="Rpl27a"
                     /inference="alignment:Splign:2.1.0"
     exon            347..1057
                     /gene="Rpl27a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcctccctct ttcttttctg ccaccgccat gccatccaga ctgaggaaga cccggaaact
       61 ccggggccac gtgagccacg gccacggtcg catcggtaag caccgcaagc acccaggagg
      121 ccgcgggaat gctggaggca tgcatcacca caggatcaac tttgacaaat atcatccagg
      181 ttacttcggc aaagttggca tgaggcatta ccacttgaag aggaaccaga gcttctgccc
      241 aactgtcaac ctggataaat tatggacgtt ggtcagcgag cagacacggg tcaatgcagc
      301 aaaaaacaag aatggagttg ctcccatcat tgacgttgtt cgatcaggct actacaaagt
      361 tctggggaag gggaagctcc ctaagcaacc tgtcatcgtg aaggccaagt tcttcagcag
      421 aagagctgaa gagaagataa agggtgtggg aggtgcctgt gtcctggtgg cttaaagcca
      481 cttcagaggc taattaaatg caaacatttt ccatgtggtc tgagtaggtt ctttgcatcc
      541 ttccttgtct gcgcgttgag aatctccctg acaataagta cactgtagct gtcttcatgc
      601 acaccagaag agggcatcag atctcattac agatggctgt gagccaccat gtggttgctg
      661 ggatttgacc tcaggacctc tggaagagca gtcagtgctc ttagccatct ctccagcccc
      721 tcctgaaaaa tcttaagtta tgggaaaaac cttgccgtcc atattaacat ttgcctgact
      781 ttgtaagctc actatagtgg acaggtggct caggactggg ctacttagta ctggacaggt
      841 tagcatggag aacgtagggg aagaggtgta ggctccatcc agcttcactt gatggcatcc
      901 aggtggtgtt cctagggagc atgtctacct gcaacagcac atcagcactg caaactgagg
      961 atattttaga atcagagctg tgctctttga actattggga agatgaggct ttaagaggac
     1021 cttggaataa aaaaccaaga acttgattgt ctacctc
//
