LOCUS       NM_001408997            1682 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribosomal protein L21 (Rpl21), transcript variant
            4, mRNA.
ACCESSION   NM_001408997 XM_039089793
VERSION     NM_001408997.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1682)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   2  (bases 1 to 1682)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 1682)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 1682)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   5  (bases 1 to 1682)
  AUTHORS   Odintsova,T.I., Muller,E.C., Ivanov,A.V., Egorov,T.A., Bienert,R.,
            Vladimirov,S.N., Kostka,S., Otto,A., Wittmann-Liebold,B. and
            Karpova,G.G.
  TITLE     Characterization and analysis of posttranslational modifications of
            the human large cytoplasmic ribosomal subunit proteins by mass
            spectrometry and Edman sequencing
  JOURNAL   J Protein Chem 22 (3), 249-258 (2003)
   PUBMED   12962325
REFERENCE   6  (bases 1 to 1682)
  AUTHORS   Devi,K.R., Chan,Y.L. and Wool,I.G.
  TITLE     The primary structure of rat ribosomal protein L21
  JOURNAL   Biochem Biophys Res Commun 162 (1), 364-370 (1989)
   PUBMED   2751657
REFERENCE   7  (bases 1 to 1682)
  AUTHORS   Hultin,T.
  TITLE     Selective high-efficiency cross-linking of mammalian ribosomal
            proteins with cleavable thiol-directed heterobifunctional reagents:
            identification and binding directions of major protein complexes
  JOURNAL   Biochim Biophys Acta 872 (3), 226-235 (1986)
   PUBMED   3730400
REFERENCE   8  (bases 1 to 1682)
  AUTHORS   Uchiumi,T., Terao,K. and Ogata,K.
  TITLE     Identification of neighboring protein pairs in rat liver 60S
            ribosomal subunits cross-linked with dimethyl suberimidate or
            dimethyl 3,3'-dithiobispropionimidate
  JOURNAL   J Biochem 88 (4), 1033-1044 (1980)
   PUBMED   7451403
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On Jul 6, 2022 this sequence version replaced XM_039089793.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.11637.1,
                                           SRR26360176.889707.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840115, SAMN16676786
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-585               JAXUCZ010000012.1  13385569-13386153   c
            586-664             JAXUCZ010000012.1  13384880-13384958   c
            665-726             JAXUCZ010000012.1  13384519-13384580   c
            727-839             JAXUCZ010000012.1  13383950-13384062   c
            840-990             JAXUCZ010000012.1  13383347-13383497   c
            991-1682            JAXUCZ010000012.1  13382516-13383207   c
FEATURES             Location/Qualifiers
     source          1..1682
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12p11"
     gene            1..1682
                     /gene="Rpl21"
                     /note="ribosomal protein L21"
                     /db_xref="GeneID:79449"
                     /db_xref="RGD:68390"
     exon            1..585
                     /gene="Rpl21"
                     /inference="alignment:Splign:2.1.0"
     exon            586..664
                     /gene="Rpl21"
                     /inference="alignment:Splign:2.1.0"
     CDS             598..1080
                     /gene="Rpl21"
                     /EC_number="3.6.5.3"
                     /note="60S ribosomal protein L21"
                     /codon_start=1
                     /product="large ribosomal subunit protein eL21"
                     /protein_id="NP_001395926.1"
                     /db_xref="GeneID:79449"
                     /db_xref="RGD:68390"
                     /translation="MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKG
                     MGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSR
                     DSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
                     "
     exon            665..726
                     /gene="Rpl21"
                     /inference="alignment:Splign:2.1.0"
     exon            727..839
                     /gene="Rpl21"
                     /inference="alignment:Splign:2.1.0"
     exon            840..990
                     /gene="Rpl21"
                     /inference="alignment:Splign:2.1.0"
     exon            991..1682
                     /gene="Rpl21"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcagccatct tccaggttgg tgtgcgcgtg gctctctggt cttaggcgcc gcacacgctg
       61 cgtgaggagc ccaggccgcg gagactgcct gttagggtcg tggggagact gtctggaggc
      121 cactcccctg tgcggcgtgt gctagggggc ttctatccgg ggtaactggg cctggcccag
      181 tcttggttgc cgggcatcgg cctaactcca aacttgagca tgtgctgttg ggttaggact
      241 tacgattctg ggtcttaacg atatctgggt gtgtacaatc ctggaattgg ctcgggcgag
      301 aagggtgccc gccgggtcag cctggtaatg atatagatgt aatggggatc ccacctccgg
      361 atgcatgaaa cacttagcaa tttgcaaatt ttggccctta gaagacgaga gtagggaagg
      421 aaggtaacat taaggctgca aggtcagttg gttacctagt acaccatgct ttggggcttc
      481 ccatgttggt taggaatggc aggtatttct gccctgtatg actggagtaa tccaaccttg
      541 ttggttcgtg ggaaaacaag atctggctct aagtatgtgt agttgtaact cgccaaaatg
      601 acgaacacaa aaggaaagag gaggggtact cggtatatgt tctctagacc ttttaggaaa
      661 catggagtcg ttcctttggc cacatacatg cgaatctaca agaagggtga tattgtagac
      721 atcaagggaa tgggcactgt tcaaaaagga atgccccata agtgttacca tggcaaaacc
      781 ggaagagtct acaatgtcac ccagcatgcc gtgggcatca ttgtgaacaa gcaagttaaa
      841 ggcaagattc tggccaagag gatcaatgtg cggattgagc acatcaagca ctcaaagagc
      901 agagacagct tcctgaagcg ggtgaaggag aacgatcaga agaaaaagga agccaaagag
      961 aagggcacct gggttcagct gaagcgccag cctgcgccac ccagagaagc ccactttgtg
     1021 aggactaacg gaaaggagcc tgagctgctg gagcccattc catacgaatt catggcctaa
     1081 tgtatacaaa ggaaataaag aacctgaact gcaaagtctt ctccttaggt tgaagtgtgg
     1141 tgtcttctcc ctgaaagaaa atgttaaagc aaattttcat tgtctttgct gttcagattt
     1201 tactaattgt tcttctaaat gatactgctt agtgtgcaga aagtatactc ttgaatagaa
     1261 agtagtctag aatatttaca gaatatgtac cctagttctg aatcaccagg ggaaagctga
     1321 gagaaattag tttgtggcca ggcatggtgg cgcagctcta aactagcacc tggaggccga
     1381 ggcaggcggc tctagccctg caggacttgc atagtagcat gtgagggtcc caaggtggag
     1441 tatcagagag tgcgtgcctg gtgtggttcc cacatcaaag actgaattct ccagagcggg
     1501 caaacaaaac caagccaagg acagggctgg ccacagacat tttgtactac ttgctgaaaa
     1561 agcattgatt gttttcctga cctaaagagc aaggacaaat tggcattggg ctcacctttc
     1621 tggtgttctt tcaggctgta tatcacaggt gcatttaata aatgtcacca cagagtgtta
     1681 aa
//
