LOCUS       NM_212510                620 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribosomal protein L18A (Rpl18a), mRNA.
ACCESSION   NM_212510 XM_214302
VERSION     NM_212510.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Topalidou,I., Cattin-Ortola,J., Pappas,A.L., Cooper,K.,
            Merrihew,G.E., MacCoss,M.J. and Ailion,M.
  TITLE     The EARP Complex and Its Interactor EIPR-1 Are Required for Cargo
            Sorting to Dense-Core Vesicles
  JOURNAL   PLoS Genet 12 (5), e1006074 (2016)
   PUBMED   27191843
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Behrmann,E., Loerke,J., Budkevich,T.V., Yamamoto,K., Schmidt,A.,
            Penczek,P.A., Vos,M.R., Burger,J., Mielke,T., Scheerer,P. and
            Spahn,C.M.
  TITLE     Structural snapshots of actively translating human ribosomes
  JOURNAL   Cell 161 (4), 845-857 (2015)
   PUBMED   25957688
REFERENCE   3  (bases 1 to 620)
  AUTHORS   Distler,U., Schmeisser,M.J., Pelosi,A., Reim,D., Kuharev,J.,
            Weiczner,R., Baumgart,J., Boeckers,T.M., Nitsch,R., Vogt,J. and
            Tenzer,S.
  TITLE     In-depth protein profiling of the postsynaptic density from mouse
            hippocampus using data-independent acquisition proteomics
  JOURNAL   Proteomics 14 (21-22), 2607-2613 (2014)
   PUBMED   25211037
REFERENCE   4  (bases 1 to 620)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   5  (bases 1 to 620)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   6  (bases 1 to 620)
  AUTHORS   Primiano,T., Gastel,J.A., Kensler,T.W. and Sutter,T.R.
  TITLE     Isolation of cDNAs representing dithiolethione-responsive genes
  JOURNAL   Carcinogenesis 17 (11), 2297-2303 (1996)
   PUBMED   8968041
REFERENCE   7  (bases 1 to 620)
  AUTHORS   Chan,Y.L., Olvera,J. and Wool,I.G.
  TITLE     The primary structures of rat ribosomal proteins: the
            characterization of the cDNAs for S21 and L39, corrections in the
            sequences of L7 and L18a, and the identification of L33
  JOURNAL   Biochem Biophys Res Commun 213 (3), 1042-1050 (1995)
   PUBMED   7654221
REFERENCE   8  (bases 1 to 620)
  AUTHORS   Aoyama,Y., Chan,Y.L., Meyuhas,O. and Wool,I.G.
  TITLE     The primary structure of rat ribosomal protein L18a
  JOURNAL   FEBS Lett 247 (2), 242-246 (1989)
   PUBMED   2541017
REFERENCE   9  (bases 1 to 620)
  AUTHORS   Hultin,T.
  TITLE     Selective high-efficiency cross-linking of mammalian ribosomal
            proteins with cleavable thiol-directed heterobifunctional reagents:
            identification and binding directions of major protein complexes
  JOURNAL   Biochim Biophys Acta 872 (3), 226-235 (1986)
   PUBMED   3730400
REFERENCE   10 (bases 1 to 620)
  AUTHORS   Tsurugi,K., Collatz,E., Todokoro,K., Ulbrich,N., Lightfoot,H.N. and
            Wool,I.G.
  TITLE     Isolation of eukaryotic ribosomal proteins. Purification and
            characterization of the 60 S ribosomal subunit proteins La, Lb, Lf,
            P1, P2, L13', L14, L18', L20, and L38
  JOURNAL   J Biol Chem 253 (3), 946-955 (1978)
   PUBMED   621213
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On Apr 22, 2021 this sequence version replaced NM_212510.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EV772164.1, FQ221165.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-71                JAXUCZ010000016.1  18576551-18576621
            72-251              JAXUCZ010000016.1  18577640-18577819
            252-381             JAXUCZ010000016.1  18577911-18578040
            382-491             JAXUCZ010000016.1  18578244-18578353
            492-620             JAXUCZ010000016.1  18578446-18578574
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p14"
     gene            1..620
                     /gene="Rpl18a"
                     /note="ribosomal protein L18A"
                     /db_xref="GeneID:290641"
                     /db_xref="RGD:1302976"
     exon            1..71
                     /gene="Rpl18a"
                     /inference="alignment:Splign:2.1.0"
     CDS             54..584
                     /gene="Rpl18a"
                     /note="60S ribosomal protein L18a"
                     /codon_start=1
                     /product="large ribosomal subunit protein eL20"
                     /protein_id="NP_997675.1"
                     /db_xref="GeneID:290641"
                     /db_xref="RGD:1302976"
                     /translation="MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRF
                     WYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTT
                     AGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR
                     RQHKPRFTTKRPNTFF"
     exon            72..251
                     /gene="Rpl18a"
                     /inference="alignment:Splign:2.1.0"
     exon            252..381
                     /gene="Rpl18a"
                     /inference="alignment:Splign:2.1.0"
     exon            382..491
                     /gene="Rpl18a"
                     /inference="alignment:Splign:2.1.0"
     exon            492..620
                     /gene="Rpl18a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcggaggat cacacttcct tttgtgagtg gcagtgaacg agcacgcact gctatgaagg
       61 cgtcgggcac gcttcgggag tacaaggtgg tggggcgttg cttgccaacc ccaaaatgcc
      121 acacaccgcc actgtaccga atgcgaatct ttgcacccaa ccatgtggtg gccaagtccc
      181 gcttctggta ctttgtgtcg cagctgaaga agatgaagaa gtcatccggg gaaattgtgt
      241 actgtgggca ggtgtttgag aagtcacccc tgcgtgtgaa gaacttcggc atctggctgc
      301 gctatgattc ccgaagtggc actcacaaca tgtaccgaga gtaccgggac ctgaccactg
      361 ccggcgcggt cacacagtgc taccgagaca tgggtgcccg acaccgtgcc cgtgcgcact
      421 ccatccagat catgaaggtg gaagagattg cagctggcaa gtgccgccgg ccagctgtca
      481 agcagttcca cgactccaag atcaagttcc cattgcccca ccgtgtgttg cggcgccagc
      541 acaaaccacg cttcaccacc aagaggccaa acaccttctt ctagacacag agacccactg
      601 aataaaagct tcagactgtc
//
