LOCUS       NM_031102                648 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribosomal protein L18 (Rpl18), mRNA.
ACCESSION   NM_031102
VERSION     NM_031102.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Behrmann,E., Loerke,J., Budkevich,T.V., Yamamoto,K., Schmidt,A.,
            Penczek,P.A., Vos,M.R., Burger,J., Mielke,T., Scheerer,P. and
            Spahn,C.M.
  TITLE     Structural snapshots of actively translating human ribosomes
  JOURNAL   Cell 161 (4), 845-857 (2015)
   PUBMED   25957688
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   3  (bases 1 to 648)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   4  (bases 1 to 648)
  AUTHORS   Kuo,J.C., Han,X., Hsiao,C.T., Yates,J.R. 3rd and Waterman,C.M.
  TITLE     Analysis of the myosin-II-responsive focal adhesion proteome
            reveals a role for beta-Pix in negative regulation of focal
            adhesion maturation
  JOURNAL   Nat Cell Biol 13 (4), 383-393 (2011)
   PUBMED   21423176
REFERENCE   5  (bases 1 to 648)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   6  (bases 1 to 648)
  AUTHORS   Odintsova,T.I., Muller,E.C., Ivanov,A.V., Egorov,T.A., Bienert,R.,
            Vladimirov,S.N., Kostka,S., Otto,A., Wittmann-Liebold,B. and
            Karpova,G.G.
  TITLE     Characterization and analysis of posttranslational modifications of
            the human large cytoplasmic ribosomal subunit proteins by mass
            spectrometry and Edman sequencing
  JOURNAL   J Protein Chem 22 (3), 249-258 (2003)
   PUBMED   12962325
REFERENCE   7  (bases 1 to 648)
  AUTHORS   Sommer,W., Arlinde,C., Caberlotto,L., Thorsell,A., Hyytia,P. and
            Heilig,M.
  TITLE     Differential expression of diacylglycerol kinase iota and L18A
            mRNAs in the brains of alcohol-preferring AA and alcohol-avoiding
            ANA rats
  JOURNAL   Mol Psychiatry 6 (1), 103-8 (2001)
   PUBMED   11244494
REFERENCE   8  (bases 1 to 648)
  AUTHORS   Devi,K.R., Chan,Y.L. and Wool,I.G.
  TITLE     The primary structure of rat ribosomal protein L18
  JOURNAL   DNA 7 (3), 157-162 (1988)
   PUBMED   3371159
REFERENCE   9  (bases 1 to 648)
  AUTHORS   Hultin,T.
  TITLE     Selective high-efficiency cross-linking of mammalian ribosomal
            proteins with cleavable thiol-directed heterobifunctional reagents:
            identification and binding directions of major protein complexes
  JOURNAL   Biochim Biophys Acta 872 (3), 226-235 (1986)
   PUBMED   3730400
REFERENCE   10 (bases 1 to 648)
  AUTHORS   Faliks,D. and Meyuhas,O.
  TITLE     Coordinate regulation of ribosomal protein mRNA level in
            regenerating rat liver. Study with the corresponding mouse cloned
            cDNAs
  JOURNAL   Nucleic Acids Res 10 (3), 789-801 (1982)
   PUBMED   6121318
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB577548.1 and BC084727.1.
            
            On Mar 8, 2007 this sequence version replaced NM_031102.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC084727.1, FQ228615.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-8                 CB577548.1         1-8
            9-648               BC084727.1         1-640
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q22"
     gene            1..648
                     /gene="Rpl18"
                     /note="ribosomal protein L18"
                     /db_xref="GeneID:81766"
                     /db_xref="RGD:621182"
     exon            1..18
                     /gene="Rpl18"
                     /inference="alignment:Splign:2.1.0"
     CDS             16..582
                     /gene="Rpl18"
                     /note="60S ribosomal protein L18"
                     /codon_start=1
                     /product="large ribosomal subunit protein eL18"
                     /protein_id="NP_112364.1"
                     /db_xref="GeneID:81766"
                     /db_xref="RGD:621182"
                     /translation="MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFN
                     QVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCA
                     LRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPH
                     SHTKPYVRSKGRKFERARGRRASRGYKN"
     exon            19..105
                     /gene="Rpl18"
                     /inference="alignment:Splign:2.1.0"
     exon            106..213
                     /gene="Rpl18"
                     /inference="alignment:Splign:2.1.0"
     exon            214..312
                     /gene="Rpl18"
                     /inference="alignment:Splign:2.1.0"
     exon            313..506
                     /gene="Rpl18"
                     /inference="alignment:Splign:2.1.0"
     exon            507..622
                     /gene="Rpl18"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcaggaggcg ccatcatggg tgttgacatt cgccacaaca aggaccgaaa ggttcggcgc
       61 aaggagccca agagccagga tatctacctg cggctgctag tcaagctgta caggtttctg
      121 gccagacgga ccaactccac cttcaaccag gttgtgctga aaaggttatt tatgagccga
      181 actaaccggc cacctctgtc cctgtcccga atgatccgga agatgaagct tcctggtcgg
      241 gagaacaaaa ctgctgtggt tgtggggacg atcacagatg atgtgcggat tctggaagtg
      301 cccaagctga aggtgtgtgc actgagggtg agcagccggg cccgaagtcg gatcctcaag
      361 gctgggggta agatcctgac cttcgaccag ctggccctgg agtctcccaa gggcaggggc
      421 actgtgctct tgtctggtcc tcggaagggc cgagaggtgt accgacactt tggcaaggcc
      481 ccaggaactc cacacagcca caccaaaccc tatgtccgtt ccaagggccg gaagttcgag
      541 cgtgccagag gccgaagggc cagccgaggc tacaaaaact aaccctggct cttactgtta
      601 ataaaaaagc tttggatgtt gaaaaaaaaa aaaaaaaaaa aaaaaaaa
//
