LOCUS       NM_201415                621 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Rattus norvegicus ribosomal protein L17 (Rpl17), mRNA.
ACCESSION   NM_201415 XM_214531
VERSION     NM_201415.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 621)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   2  (bases 1 to 621)
  AUTHORS   Smolock,E.M., Korshunov,V.A., Glazko,G., Qiu,X., Gerloff,J. and
            Berk,B.C.
  TITLE     Ribosomal protein L17, RpL17, is an inhibitor of vascular smooth
            muscle growth and carotid intima formation
  JOURNAL   Circulation 126 (20), 2418-2427 (2012)
   PUBMED   23065385
REFERENCE   3  (bases 1 to 621)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   4  (bases 1 to 621)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   5  (bases 1 to 621)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   6  (bases 1 to 621)
  AUTHORS   Laine,R.O., Laipis,P.J., Shay,N.F. and Kilberg,M.S.
  TITLE     Identification of an amino acid-regulated mRNA from rat liver as
            the mammalian equivalent of bacterial ribosomal protein L22
  JOURNAL   J Biol Chem 266 (26), 16969-16972 (1991)
   PUBMED   1894596
REFERENCE   7  (bases 1 to 621)
  AUTHORS   Suzuki,K. and Wool,I.G.
  TITLE     The primary structure of rat ribosomal protein L17
  JOURNAL   Biochem Biophys Res Commun 178 (1), 322-328 (1991)
   PUBMED   2069571
REFERENCE   8  (bases 1 to 621)
  AUTHORS   Shay,N.F., Nick,H.S. and Kilberg,M.S.
  TITLE     Molecular cloning of an amino acid-regulated mRNA (amino acid
            starvation-induced) in rat hepatoma cells
  JOURNAL   J Biol Chem 265 (29), 17844-17848 (1990)
   PUBMED   2211664
REFERENCE   9  (bases 1 to 621)
  AUTHORS   Horne,Z. and Hesketh,J.
  TITLE     Immunological localization of ribosomes in striated rat muscle.
            Evidence for myofibrillar association and ontological changes in
            the subsarcolemmal:myofibrillar distribution
  JOURNAL   Biochem J 268 (1), 231-236 (1990)
   PUBMED   2188648
REFERENCE   10 (bases 1 to 621)
  AUTHORS   Buisson,M. and Reboud,A.M.
  TITLE     Carbodiimide-induced protein--RNA crosslinking in mammalian
            ribosomal subunits
  JOURNAL   FEBS Lett 148 (2), 247-250 (1982)
   PUBMED   6759166
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            FQ222545.1.
            
            On Jun 3, 2021 this sequence version replaced NM_201415.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ142979.1, FQ222545.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-621               FQ222545.1         1-621
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18q12.2"
     gene            1..621
                     /gene="Rpl17"
                     /gene_synonym="ASI; rpL23"
                     /note="ribosomal protein L17"
                     /db_xref="GeneID:291434"
                     /db_xref="RGD:1303019"
     exon            1..22
                     /gene="Rpl17"
                     /gene_synonym="ASI; rpL23"
                     /inference="alignment:Splign:2.1.0"
     exon            23..75
                     /gene="Rpl17"
                     /gene_synonym="ASI; rpL23"
                     /inference="alignment:Splign:2.1.0"
     CDS             36..590
                     /gene="Rpl17"
                     /gene_synonym="ASI; rpL23"
                     /note="60S ribosomal protein L17; L23; amino acid
                     starvation-induced protein"
                     /codon_start=1
                     /product="large ribosomal subunit protein uL22"
                     /protein_id="NP_958818.1"
                     /db_xref="GeneID:291434"
                     /db_xref="RGD:1303019"
                     /translation="MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKA
                     TKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNA
                     ELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKP
                     EEEVAQKKKISQKKLKKQKLMARE"
     exon            76..116
                     /gene="Rpl17"
                     /gene_synonym="ASI; rpL23"
                     /inference="alignment:Splign:2.1.0"
     exon            117..251
                     /gene="Rpl17"
                     /gene_synonym="ASI; rpL23"
                     /inference="alignment:Splign:2.1.0"
     exon            252..350
                     /gene="Rpl17"
                     /gene_synonym="ASI; rpL23"
                     /inference="alignment:Splign:2.1.0"
     exon            351..542
                     /gene="Rpl17"
                     /gene_synonym="ASI; rpL23"
                     /inference="alignment:Splign:2.1.0"
     exon            543..621
                     /gene="Rpl17"
                     /gene_synonym="ASI; rpL23"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcttcctgt tagcggccag aggtgacctg tgaagatggt tcgctactcc cttgacccag
       61 aaaaccccac gaaatcatgc aagtcaagag gctcaaacct tcgtgttcac tttaagaaca
      121 cccgggaaac tgcccaggcc atcaagggta tgcatatccg caaagccacc aagtatctga
      181 aggatgtcac tttaaagaag cagtgtgtgc cattccggcg gtataatggt ggagttggta
      241 ggtgcgccca ggccaaacag tggggctgga cacagggacg gtggccaaaa aagagtgctg
      301 aatttttgct gcacatgctt aaaaatgcag agagtaatgc tgaacttaag ggtttggatg
      361 tagactctct ggtcattgaa cacatccagg tgaacaaggc tcctaagatg cgcagacgga
      421 cctacagagc tcacggccgg attaacccat acatgagctc cccctgccac atcgagatga
      481 tcctcactga gaaggaacag attgttccaa agccagaaga ggaggttgca cagaagaaaa
      541 agatatccca gaagaaattg aagaaacaaa agctcatggc acgggaataa attcagcata
      601 aataaatgcg gataaagtaa a
//
