LOCUS       NM_031101                722 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus ribosomal protein L13 (Rpl13), mRNA.
ACCESSION   NM_031101
VERSION     NM_031101.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 722)
  AUTHORS   Le Caignec,C., Ory,B., Lamoureux,F., O'Donohue,M.F., Orgebin,E.,
            Lindenbaum,P., Teletchea,S., Saby,M., Hurst,A., Nelson,K.,
            Gilbert,S.R., Wilnai,Y., Zeitlin,L., Segev,E., Tesfaye,R.,
            Nizon,M., Cogne,B., Bezieau,S., Geoffroy,L., Hamel,A.,
            Mayrargue,E., de Courtivron,B., Decock-Giraudaud,A., Charrier,C.,
            Pichon,O., Retiere,C., Redon,R., Pepler,A., McWalter,K., Da
            Costa,L., Toutain,A., Gleizes,P.E., Baud'huin,M. and Isidor,B.
  TITLE     RPL13 Variants Cause Spondyloepimetaphyseal Dysplasia with Severe
            Short Stature
  JOURNAL   Am J Hum Genet 105 (5), 1040-1047 (2019)
   PUBMED   31630789
REFERENCE   2  (bases 1 to 722)
  AUTHORS   Yu,C., Ji,S.Y., Dang,Y.J., Sha,Q.Q., Yuan,Y.F., Zhou,J.J.,
            Yan,L.Y., Qiao,J., Tang,F. and Fan,H.Y.
  TITLE     Oocyte-expressed yes-associated protein is a key activator of the
            early zygotic genome in mouse
  JOURNAL   Cell Res 26 (3), 275-287 (2016)
   PUBMED   26902285
REFERENCE   3  (bases 1 to 722)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   4  (bases 1 to 722)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   5  (bases 1 to 722)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   6  (bases 1 to 722)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   7  (bases 1 to 722)
  AUTHORS   Odintsova,T.I., Muller,E.C., Ivanov,A.V., Egorov,T.A., Bienert,R.,
            Vladimirov,S.N., Kostka,S., Otto,A., Wittmann-Liebold,B. and
            Karpova,G.G.
  TITLE     Characterization and analysis of posttranslational modifications of
            the human large cytoplasmic ribosomal subunit proteins by mass
            spectrometry and Edman sequencing
  JOURNAL   J Protein Chem 22 (3), 249-258 (2003)
   PUBMED   12962325
REFERENCE   8  (bases 1 to 722)
  AUTHORS   Olvera,J. and Wool,I.G.
  TITLE     The primary structure of rat ribosomal protein L13
  JOURNAL   Biochem Biophys Res Commun 201 (1), 102-107 (1994)
   PUBMED   8198561
REFERENCE   9  (bases 1 to 722)
  AUTHORS   Faliks,D. and Meyuhas,O.
  TITLE     Coordinate regulation of ribosomal protein mRNA level in
            regenerating rat liver. Study with the corresponding mouse cloned
            cDNAs
  JOURNAL   Nucleic Acids Res 10 (3), 789-801 (1982)
   PUBMED   6121318
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from X78327.1.
            
            [WARNING] On Jul 15, 2024 this sequence was replaced by
            NM_031101.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: X78327.1, FQ221209.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..722
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..722
                     /gene="Rpl13"
                     /note="ribosomal protein L13"
                     /db_xref="GeneID:81765"
                     /db_xref="RGD:621179"
     exon            1..33
                     /gene="Rpl13"
                     /inference="alignment:Splign:2.1.0"
     exon            34..143
                     /gene="Rpl13"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..675
                     /gene="Rpl13"
                     /EC_number="3.6.5.3"
                     /note="60S ribosomal protein L13"
                     /codon_start=1
                     /product="large ribosomal subunit protein eL13"
                     /protein_id="NP_112363.1"
                     /db_xref="GeneID:81765"
                     /db_xref="RGD:621179"
                     /translation="MAPSRNGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKAR
                     RIAPRPASGPISPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRR
                     RNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNV
                     YKKEKARAITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQDVEKKK"
     exon            144..285
                     /gene="Rpl13"
                     /inference="alignment:Splign:2.1.0"
     exon            286..459
                     /gene="Rpl13"
                     /inference="alignment:Splign:2.1.0"
     exon            460..516
                     /gene="Rpl13"
                     /inference="alignment:Splign:2.1.0"
     exon            517..719
                     /gene="Rpl13"
                     /inference="alignment:Splign:2.1.0"
     regulatory      695..700
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl13"
ORIGIN      
        1 tcctttccgc tcggccgttc tcctgtacag gaggcagcca tggcgcccag ccggaatggc
       61 atgatcctga agccccactt ccacaaggac tggcagcagc gagtggacac gtggttcaac
      121 cagccggccc gcaagatccg cagacgcaag gcccggcagg cgaaagcgcg ccgcatcgcc
      181 cctcgccccg cgtccggtcc catcagcccc atcgtgaggt gccctacagt tagataccac
      241 accaaggtcc gggctggcag gggcttcagc ctggaggagc tcagggtggc tggtatccac
      301 aagaaaatgg cacgcaccat cggcatctcc gtggacccaa ggaggcgaaa caaatccacg
      361 gagtcactgc aggccaacgt gcagcgcctg aaggagtacc gctccaagct catacttttc
      421 cccaggaagc cttctgctcc gaagaaggga gacagttctg ctgaagaact taaattggcc
      481 acgcagctaa caggacctgt gatgcccatc cggaatgtgt acaaaaagga gaaggccaga
      541 gccatcacgg aagaggagaa gaactttaag gctttcgcca gccttcgcat ggcccgagcc
      601 aatgcccggc tcttcggcat ccgagcaaag agggcgaaag aagccgcaga gcaagacgtt
      661 gagaagaaga aataatgcgc ggctggagag ttgtaataaa ttttccataa agcaaaaaaa
      721 aa
//
