LOCUS       NM_031065                710 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribosomal protein L10A (Rpl10a), mRNA.
ACCESSION   NM_031065
VERSION     NM_031065.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Behrmann,E., Loerke,J., Budkevich,T.V., Yamamoto,K., Schmidt,A.,
            Penczek,P.A., Vos,M.R., Burger,J., Mielke,T., Scheerer,P. and
            Spahn,C.M.
  TITLE     Structural snapshots of actively translating human ribosomes
  JOURNAL   Cell 161 (4), 845-857 (2015)
   PUBMED   25957688
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   3  (bases 1 to 710)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   4  (bases 1 to 710)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   5  (bases 1 to 710)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   6  (bases 1 to 710)
  AUTHORS   Trinidad,J.C., Specht,C.G., Thalhammer,A., Schoepfer,R. and
            Burlingame,A.L.
  TITLE     Comprehensive identification of phosphorylation sites in
            postsynaptic density preparations
  JOURNAL   Mol Cell Proteomics 5 (5), 914-922 (2006)
   PUBMED   16452087
REFERENCE   7  (bases 1 to 710)
  AUTHORS   Odintsova,T.I., Muller,E.C., Ivanov,A.V., Egorov,T.A., Bienert,R.,
            Vladimirov,S.N., Kostka,S., Otto,A., Wittmann-Liebold,B. and
            Karpova,G.G.
  TITLE     Characterization and analysis of posttranslational modifications of
            the human large cytoplasmic ribosomal subunit proteins by mass
            spectrometry and Edman sequencing
  JOURNAL   J Protein Chem 22 (3), 249-258 (2003)
   PUBMED   12962325
REFERENCE   8  (bases 1 to 710)
  AUTHORS   Olvera,J. and Wool,I.G.
  TITLE     The primary structure of rat ribosomal protein L10a
  JOURNAL   Biochem Biophys Res Commun 220 (3), 954-957 (1996)
   PUBMED   8607874
REFERENCE   9  (bases 1 to 710)
  AUTHORS   Haviryaji,K.S., Srinivas,R., Suryanarayana,T. and Vemuri,M.C.
  TITLE     Effect of ethanol on hepatic ribosomal proteins and mRNA
  JOURNAL   Mol Cell Biochem 115 (2), 143-147 (1992)
   PUBMED   1448059
REFERENCE   10 (bases 1 to 710)
  AUTHORS   Lavergne,J.P., Marzouki,A., Reboud,J.P. and Reboud,A.M.
  TITLE     Reconstitution of the active rat liver 60 S ribosomal subunit from
            different preparations of core particles and split proteins
  JOURNAL   FEBS Lett 236 (2), 345-351 (1988)
   PUBMED   3044828
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from X93352.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: X93352.1, FQ221725.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..710
                     /gene="Rpl10a"
                     /note="ribosomal protein L10A"
                     /db_xref="GeneID:81729"
                     /db_xref="RGD:620497"
     exon            1..31
                     /gene="Rpl10a"
                     /inference="alignment:Splign:2.1.0"
     CDS             27..680
                     /gene="Rpl10a"
                     /EC_number="3.6.5.3"
                     /note="60S ribosomal protein L10a"
                     /codon_start=1
                     /product="large ribosomal subunit protein uL1"
                     /protein_id="NP_112327.1"
                     /db_xref="GeneID:81729"
                     /db_xref="RGD:620497"
                     /translation="MSSKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQ
                     KDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKK
                     LAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMK
                     KVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY"
     exon            32..106
                     /gene="Rpl10a"
                     /inference="alignment:Splign:2.1.0"
     exon            107..187
                     /gene="Rpl10a"
                     /inference="alignment:Splign:2.1.0"
     exon            188..336
                     /gene="Rpl10a"
                     /inference="alignment:Splign:2.1.0"
     exon            337..509
                     /gene="Rpl10a"
                     /inference="alignment:Splign:2.1.0"
     exon            510..710
                     /gene="Rpl10a"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      710
                     /gene="Rpl10a"
ORIGIN      
        1 cttttccggt tcccgcagcc gcagccatga gcagcaaagt ttcacgcgac accctctacg
       61 aggcggtgcg ggaagtcctg cacgggaacc agcgtaagcg ccgcaagttt ctggagacgg
      121 tggagctgca gatcagcctg aagaactacg accctcagaa ggacaaacgc ttctcgggca
      181 ccgtcaggct taagtccacc cctcgcccca agttctccgt gtgcgtcctg ggggaccagc
      241 agcactgtga tgaagccaag gccgtggata tcccccacat ggacatcgag gcgctcaaga
      301 agcttaacaa gaacaagaag ttggtcaaaa agctggccaa gaagtatgat gcctttttgg
      361 cctccgagtc tctgatcaag caaatcccac gtatcctggg cccaggccta aacaaggcgg
      421 gcaagttccc ctccctgctg acacacaatg aaaacatggt ggccaaagtg gatgaggtga
      481 aatccacaat caagttccag atgaagaagg tgctgtgtct ggccgttgcc gtcggccacg
      541 tgaagatgac cgatgacgag ctagtctaca acatccacct ggctgtcaac ttcttggtgt
      601 ccttactcaa gaaaaactgg cagaacgtcc gggctctgta catcaagagc accatgggca
      661 agccccagcg tctgtattag gacgctccaa taaacctcgt tgctgccttc
//
