LOCUS       XM_039093829            4116 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RPGR interacting protein 1 (Rpgrip1),
            mRNA.
ACCESSION   XM_039093829
VERSION     XM_039093829.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 3, 2024 this sequence was replaced by
            NM_001427786.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4116
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4116
                     /gene="Rpgrip1"
                     /note="RPGR interacting protein 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 2 Proteins, and 86% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:305850"
                     /db_xref="RGD:1310807"
     CDS             36..4043
                     /gene="Rpgrip1"
                     /codon_start=1
                     /product="X-linked retinitis pigmentosa GTPase
                     regulator-interacting protein 1"
                     /protein_id="XP_038949757.1"
                     /db_xref="GeneID:305850"
                     /db_xref="RGD:1310807"
                     /translation="MMLHLLDHMPEDRPVRDTDSIPLSKGTSGKNVKAQSRSGRMNRE
                     KLNYRPFQLHEDPMVVKELSPKQRDKSRRPRTNMKRSTTTQPDLRTLAVLQEPVRQRP
                     PWVSASLRSLVTRHAQVPRRKAHMQRQCPSTAAGSTQSRVHVGRRCPNFSGPNDRRSH
                     TAPPTFKDYVMDENPSMEVTSEPSQPTHIMTTDSTHAEETSRSPEKMSKVEKLEQRSS
                     LECAEKAAELRATIKENVELIRLKKLLYERSASLAATEAQLTRVQEAYEDLLQKNQGI
                     LDATHDAFLSQVNELKAELSEESKKAVSLRIQLGDVSILQKTLKEFQVRVEDLESERK
                     LLSDSYDRLLENMLESSHQPLESSHQPHWNRELMAEQLPQQVCPLLDQVGAELEETKV
                     LLQVTNQVAQDEQLTFQVTSILCQHKQEEENLQSTATIPLFPEELFELAVQPTLLAQT
                     VQRESSEPRVQEESSLSQVLNELQVSHAETALELEKTRDMLLLQRKINLCYQEELEAT
                     LTKADKENRDHEETMERLTHLLDFKNSRIMQLEGILRSHGLPTSEQLKDVAYGTRQPS
                     LCLESPAAHRGEDEVDMSLLHPSENLFELHIHQAFLTPAALIQAGDAQPTTFCTYSFY
                     DFETHCTPFCTGPQPLYDFTSQYVVQTDYLFLHHLHGTSVRLDLHQAMASEHQVLATG
                     WISLDKVLETVERVHGLATLTGAGGEDLGVLEYWMRLCLPLKSSLQACNKRKKAQAYL
                     SVNVLGGWKAQNDESRSEAWAPQNELRIEITRCCGLRSRWGGRQPSPYVMYRFFTFPD
                     HATTVIPASSDPYFKDQALFPVPVTSDLDEYLRREALSLYVFDDEDPEPGSFLGRVQV
                     PLLPLAQNKSLKGDFNLTDAGEMSNGSIQVQLDWKSHHLPPESLQMSEAEKQKEEEKE
                     EEREEEEKEEEKEEEEEEEEEKEEEKEEEKEEEKEEEKEEEKEEEEEEEDEGEEEEEK
                     EEEKEEEKEEEKEKEKEKENKDGLEVSFTEEQTPFLPQAQIASTEIPIEAGQYQEKRK
                     PPVIAERKEKERQVTSYSRRKHSKKPGVQGKNRMEYLSCNILNGDIQQMRYTEWKFSG
                     LKMYEDDGLKVQQKEEEQPSPHSALRQDQPSHSINASSPTDQESSEQASEVSEAHTPD
                     SDDIVVTPQSQTCPKADSEKMCIEIVSLAFCPEADVMADENIRQVYVEYKFCDLPLSE
                     TETPVSLRKPRAGEEIHFHFSKVIDLDPVEHQDRRQFLFAMLQAQNSDEGRLKFTVVS
                     DPLDEEKKECQDIGYAYLELWQIFQSGKDILEQELEIVSPGNQAIQIGRLKVSLQATA
                     ALHGIYKEMTEDLFS"
ORIGIN      
        1 tgtcttctag actctctcag aacccggtaa tcgagatgat gctgcatctc ctggatcata
       61 tgccagagga tcggccagtt agagacacag actccattcc tttgtcgaaa gggacttcag
      121 gtaagaatgt aaaggcccag tcacgctcgg gcaggatgaa ccgagagaaa ctgaactaca
      181 gaccctttca actccatgaa gatcccatgg tggtgaagga actctctcca aagcaacgag
      241 ataaaagcag aaggccaagg actaacatga agcggtccac cactacccaa ccagacctac
      301 ggacacttgc tgtgctccag gagcctgtga ggcagaggcc accgtgggtc tcagcatccc
      361 tgcgctcctt ggtgacccgg cacgcccagg ttcctaggag gaaagcacat atgcagcgcc
      421 agtgtccctc gactgcagca ggcagtacac agtctcgagt ccacgtggga cgcagatgcc
      481 caaacttttc agggccaaat gacagacgca gccacacagc ccctcccaca tttaaggact
      541 atgtgatgga tgaaaacccc agtatggaag taaccagtga gcccagccaa cctactcaca
      601 ttatgactac tgactctaca catgcggaag agacctccag gtctcctgag aaaatgtcca
      661 aagttgaaaa gcttgaacag agaagctcac tggagtgtgc tgagaaggct gcagaacttc
      721 gagctaccat taaagagaac gtggagctga ttcgacttaa gaagctctta tacgagagga
      781 gtgcctcgct ggcagccaca gaagcccagc tgacacgagt tcaagaggca tatgaagact
      841 tgctccagaa gaatcaggga atcttggatg caacccatga tgccttcctc agccaagtga
      901 atgaactcaa agcagaactg agtgaagaga gcaagaaggc tgtgagcttg aggatccagc
      961 tgggagatgt gtctatcctg cagaaaactc tgaaggagtt tcaggtcaga gttgaagatt
     1021 tggaaagtga acgaaaactg ctgagtgaca gttatgacag actcttagaa aacatgctgg
     1081 agagcagtca ccagcctctg gagagcagtc accagcctca ctggaacagg gagctcatgg
     1141 cggagcagct cccacagcaa gtctgtccac tgctggacca agtaggcgct gagctggagg
     1201 agaccaaagt cttgcttcaa gtaaccaacc aagtagctca agatgaacag ttgacgtttc
     1261 aagtcaccag catcctttgc cagcataaac aggaagaaga gaaccttcag tcaacagcca
     1321 ccatacccct gtttccagaa gagctgtttg aactggctgt tcagccaact ctactcgcac
     1381 agacagttca gagagagtcc agtgaaccaa gagtccaaga ggagagtagc ctgtcccagg
     1441 tgctgaatga gctgcaagtg tcacacgcag agaccgcact ggagctggag aaaaccagag
     1501 acatgcttct tctgcagcgc aagatcaact tgtgttatca ggaggagctg gaggcaacgc
     1561 tgacaaaggc tgacaaggaa aatagggacc acgaagagac gatggagagg ctgactcacc
     1621 tcctagactt caagaacagc cgcataatgc agctggaagg tattttaaga agtcacggcc
     1681 ttccaacatc tgagcagctc aaagacgttg cttatggcac tcggcaacca tcgctgtgtc
     1741 tggagtcccc ggcagcccac agaggcgagg atgaagtgga catgtctctg ctgcatccaa
     1801 gcgagaacct ttttgagctg cacatccacc aggccttcct gacccccgct gccctcatac
     1861 aggctgggga tgcgcagcct accactttct gcacttactc cttctatgat tttgaaacac
     1921 actgcacccc attctgtact gggccacagc ccctctatga cttcacctcc cagtatgtag
     1981 tgcagaccga ctacctcttc ctgcaccacc ttcacggaac ctcagtacgg cttgacctcc
     2041 atcaggccat ggctagtgag caccaggtcc ttgctacggg atggatttca ttggacaagg
     2101 tgctagagac tgtggagcga gtccatggct tggccacact tactggagct ggcggagaag
     2161 acttgggggt gttagaatac tggatgagac tgtgcttgcc cctaaaatcc agcctccagg
     2221 catgcaataa gcgaaagaaa gcccaggcct acctgtcagt caatgtgctt ggaggttgga
     2281 aggcgcagaa tgatgagtcc agatccgaag cctgggcacc tcagaatgag ctgcggattg
     2341 aaatcaccag gtgctgcggc ctccggagtc ggtggggagg aaggcagccc agcccgtacg
     2401 tcatgtatcg cttcttcacc tttcccgacc atgccaccac tgtcattccg gccagcagtg
     2461 acccgtactt taaagaccag gctctgttcc ccgtgcctgt gacctctgac ctggacgagt
     2521 acctgaggcg ggaagctctg tctctatatg ttttcgatga tgaagaccca gagcctggct
     2581 cctttctcgg ccgagtccag gtgcccttgc tgcctcttgc acaaaacaaa tctctcaaag
     2641 gtgatttcaa ccttacagac gctggggaga tgtccaatgg ctccatccaa gtgcagctag
     2701 actggaagtc tcaccatctg cccccagaga gcctccagat gtcagaagct gagaagcaga
     2761 aggaggaaga gaaggaggaa gagagggaag aggaggagaa ggaggaagag aaggaggagg
     2821 aggaagaaga ggaggaagag aaggaggaag agaaggaaga agagaaggag gaagagaagg
     2881 aagaagagaa ggaggaagag aaggaggaag aggaagaaga ggaggatgag ggagaggagg
     2941 aggaagagaa ggaggaagag aaggaagaag agaaggagga ggagaaggag aaggagaagg
     3001 agaaggagaa caaagatggc ttggaggtct cattcacaga agagcagacc ccttttcttc
     3061 cccaggctca gatagcatct acagagattc ccatagaggc tggccagtat caagagaaga
     3121 gaaaacctcc tgtaatagca gaaaggaagg aaaaagagcg gcaggtcaca agctactcac
     3181 gaagaaaaca cagcaaaaaa ccaggtgtcc aaggcaaaaa cagaatggaa tatctgagct
     3241 gtaacatctt gaatggagac atacagcaga tgcgttacac tgagtggaag ttctcagggc
     3301 tcaagatgta tgaggatgat ggtttgaaag ttcagcagaa ggaagaggaa cagccatcac
     3361 cccattcagc actgagacag gaccaaccct cacattctat aaatgcctcc tccccaacag
     3421 accaagaatc cagtgaacaa gcttctgaag tcagtgaagc acacactcct gacagcgatg
     3481 atatcgtagt gacaccccag tctcagacgt gtcctaaagc tgattcagag aagatgtgca
     3541 ttgaaatagt ctccctggcc ttctgccctg aggctgacgt catggcggat gagaatatcc
     3601 ggcaggtata tgtggagtac aaattctgtg atctgcctct atcggagaca gagactccag
     3661 tgtccctgag gaaaccaagg gcaggcgaag aaatccactt ccactttagc aaggtgatag
     3721 atctggaccc agtggagcat caagaccgac ggcagttttt gtttgccatg ctacaagctc
     3781 aaaattctga tgagggacgt ttaaagttta cagtggtaag cgatcctctg gatgaagaaa
     3841 aaaaagaatg tcaagatata ggctatgcat acctcgaact gtggcagata tttcaatccg
     3901 gaaaagatat cctagagcaa gaactagaga ttgtgagccc tggaaaccag gccatccaaa
     3961 ttggaaggct gaaggtttcc ctccaagcaa ctgctgccct ccatggcatt tataaggaga
     4021 tgactgaaga tctgttttca taagttctac tccactctac aatttgaggg aatcacagtt
     4081 caacgtgtct tataaaataa catgctatgc cataaa
//
