LOCUS       NM_001106391            1226 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus ribosome production factor 2 homolog (Rpf2),
            mRNA.
ACCESSION   NM_001106391 XM_001063295 XM_215404
VERSION     NM_001106391.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1226)
  AUTHORS   Sloan KE, Bohnsack MT and Watkins NJ.
  TITLE     The 5S RNP couples p53 homeostasis to ribosome biogenesis and
            nucleolar stress
  JOURNAL   Cell Rep 5 (1), 237-247 (2013)
   PUBMED   24120868
REFERENCE   2  (bases 1 to 1226)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 1226)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC158719.1.
            
            On Jan 27, 2008 this sequence version replaced NM_001106391.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158719.1, FQ213429.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1226
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20q12"
     gene            1..1226
                     /gene="Rpf2"
                     /gene_synonym="Bxdc1"
                     /note="ribosome production factor 2 homolog"
                     /db_xref="GeneID:294436"
                     /db_xref="RGD:1306906"
     exon            1..43
                     /gene="Rpf2"
                     /gene_synonym="Bxdc1"
                     /inference="alignment:Splign:2.1.0"
     CDS             21..941
                     /gene="Rpf2"
                     /gene_synonym="Bxdc1"
                     /note="brix domain containing 1"
                     /codon_start=1
                     /product="ribosome production factor 2 homolog"
                     /protein_id="NP_001099861.1"
                     /db_xref="GeneID:294436"
                     /db_xref="RGD:1306906"
                     /translation="MDALDKVLKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANAT
                     VTQVLRDVYALKKPYGVLYKKKNITRPFEDQTSLEFFSKKSDCSLFMFGSHNKKRPNN
                     LVIGRMYDYHVLDMIELGIEKFVSLKDIKTSKCPEGTKPMLIFAGDDFDVTEDYRRLK
                     NLLIDFFRGPTVSNVRLAGLEYVLHFTALNGKVYFRSYKLLLKKSGCRTPRIELEEMG
                     PSLDLVVRRTHLASDDLYKLSMKVPKALKPKKRKNISQDTFGTTFGRIHMQKQDLSKL
                     QTRKVKGLKKRPAENGVEDQGKKSKRIKKS"
     exon            44..176
                     /gene="Rpf2"
                     /gene_synonym="Bxdc1"
                     /inference="alignment:Splign:2.1.0"
     exon            177..214
                     /gene="Rpf2"
                     /gene_synonym="Bxdc1"
                     /inference="alignment:Splign:2.1.0"
     exon            215..254
                     /gene="Rpf2"
                     /gene_synonym="Bxdc1"
                     /inference="alignment:Splign:2.1.0"
     exon            255..336
                     /gene="Rpf2"
                     /gene_synonym="Bxdc1"
                     /inference="alignment:Splign:2.1.0"
     exon            337..413
                     /gene="Rpf2"
                     /gene_synonym="Bxdc1"
                     /inference="alignment:Splign:2.1.0"
     exon            414..513
                     /gene="Rpf2"
                     /gene_synonym="Bxdc1"
                     /inference="alignment:Splign:2.1.0"
     exon            514..616
                     /gene="Rpf2"
                     /gene_synonym="Bxdc1"
                     /inference="alignment:Splign:2.1.0"
     exon            617..761
                     /gene="Rpf2"
                     /gene_synonym="Bxdc1"
                     /inference="alignment:Splign:2.1.0"
     exon            762..1191
                     /gene="Rpf2"
                     /gene_synonym="Bxdc1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cactaggaga tccagcagcg atggatgctt tggacaaagt cctaaagcct aaaacaaaaa
       61 gggctaagag attccttgag aagagagaac caaaactcag tgagaacatt aagaatgcca
      121 tgctgattaa aggcgggaat gcgaatgcaa cggtgacgca agtactgaga gacgtgtatg
      181 cactgaagaa accgtatgga gttctctata aaaagaaaaa cattacaaga ccatttgagg
      241 atcagacgtc actggagttc ttttcaaaga agtcggactg ttctctgttc atgtttggct
      301 cccacaataa gaagaggccc aataatctcg tgataggtcg tatgtatgac taccatgtgc
      361 tggatatgat tgaactaggg attgagaaat tcgtgtctct gaaagatatt aagacaagta
      421 agtgccctga gggaacaaag cccatgttga tatttgctgg tgatgatttt gatgtaacag
      481 aagactacag aagactgaaa aatcttctta ttgatttctt cagaggcccc acagtgtcaa
      541 acgtccgtct ggctggatta gagtatgttc tgcacttcac ggcactgaat gggaaggttt
      601 actttcgaag ctataagctg ctgctgaaga aatctgggtg cagaacaccg agaatcgagc
      661 tagaagagat ggggccatcg ttggatctgg ttgtgaggag gacacactta gcatcggacg
      721 acctttataa actgtccatg aaagtgccca aagctctcaa gccgaagaag aggaagaata
      781 tctctcagga tacttttggt acaacgtttg gaaggattca tatgcagaag caagacctaa
      841 gcaaactaca gacgaggaaa gtgaaggggt tgaagaagcg gcctgcagag aatggagtag
      901 aagaccaggg gaagaaatca aagagaatta agaaaagtta gtgaacctga ctgacagaca
      961 gcatcacctt cttgtgtcgt ttactaaaga gaatttttct gcttgaggct gtttggtttt
     1021 ctgataagac tttgtggctt atttggatgg ggtgagggtg tgacaaaatt tcacactgta
     1081 gcccaggctg gccccagcct cccaagtgct gtgatatacc atcagagcca gcacactgta
     1141 tatttctata acattattta ttacgtaaaa ctttttttta aaaaattgaa aaaaaaaaaa
     1201 aaaaaaaaaa aaaaaaaaaa aaaaaa
//
