LOCUS       NM_001100794            1308 bp    mRNA    linear   ROD 11-DEC-2024
DEFINITION  Rattus norvegicus ribosome production factor 1 (Rpf1), mRNA.
ACCESSION   NM_001100794 XM_001059406 XM_001077189 XM_001077236 XM_575059
VERSION     NM_001100794.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1308)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 1308)
  AUTHORS   Scherl,A., Coute,Y., Deon,C., Calle,A., Kindbeiter,K.,
            Sanchez,J.C., Greco,A., Hochstrasser,D. and Diaz,J.J.
  TITLE     Functional proteomic analysis of human nucleolus
  JOURNAL   Mol Biol Cell 13 (11), 4100-4109 (2002)
   PUBMED   12429849
REFERENCE   3  (bases 1 to 1308)
  AUTHORS   Wehner,K.A. and Baserga,S.J.
  TITLE     The sigma(70)-like motif: a eukaryotic RNA binding domain unique to
            a superfamily of proteins required for ribosome biogenesis
  JOURNAL   Mol Cell 9 (2), 329-339 (2002)
   PUBMED   11864606
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC166888.1, DY564389.1 and BI299235.1.
            
            On or before Nov 21, 2008 this sequence version replaced
            XM_001077236.1, XM_001077189.1, XM_575059.2, XM_001059406.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166888.1, FQ220191.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-43                BC166888.1         1-43
            44-253              DY564389.1         23-232
            254-1248            BC166888.1         251-1245
            1249-1308           BI299235.1         1-60                c
FEATURES             Location/Qualifiers
     source          1..1308
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q44"
     gene            1..1308
                     /gene="Rpf1"
                     /gene_synonym="Bxdc5"
                     /note="ribosome production factor 1"
                     /db_xref="GeneID:499725"
                     /db_xref="RGD:1559755"
     exon            1..257
                     /gene="Rpf1"
                     /gene_synonym="Bxdc5"
                     /inference="alignment:Splign:2.1.0"
     CDS             30..1079
                     /gene="Rpf1"
                     /gene_synonym="Bxdc5"
                     /note="RNA processing factor 1; brix domain-containing
                     protein 5; ribosome biogenesis protein RPF1; brix domain
                     containing 5; ribosome production factor 1 homolog"
                     /codon_start=1
                     /product="ribosome production factor 1"
                     /protein_id="NP_001094264.1"
                     /db_xref="GeneID:499725"
                     /db_xref="RGD:1559755"
                     /translation="MAKAGEKSGGGGKRGLKRKAPAEEPQETAVASDGTAESGVQSAK
                     AAAFPPGFSISEIKNKQRRHLMFTRWKQQQRKEKLAAKKKLKREREALGDKAPPKPVP
                     KTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLC
                     EQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPT
                     AHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGR
                     QVATFHNQRDYIFFRFHRYIFKSEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWV
                     HKPREMDTSRRKFHL"
     exon            258..314
                     /gene="Rpf1"
                     /gene_synonym="Bxdc5"
                     /inference="alignment:Splign:2.1.0"
     exon            315..395
                     /gene="Rpf1"
                     /gene_synonym="Bxdc5"
                     /inference="alignment:Splign:2.1.0"
     exon            396..491
                     /gene="Rpf1"
                     /gene_synonym="Bxdc5"
                     /inference="alignment:Splign:2.1.0"
     exon            492..645
                     /gene="Rpf1"
                     /gene_synonym="Bxdc5"
                     /inference="alignment:Splign:2.1.0"
     exon            646..728
                     /gene="Rpf1"
                     /gene_synonym="Bxdc5"
                     /inference="alignment:Splign:2.1.0"
     exon            729..910
                     /gene="Rpf1"
                     /gene_synonym="Bxdc5"
                     /inference="alignment:Splign:2.1.0"
     exon            911..1037
                     /gene="Rpf1"
                     /gene_synonym="Bxdc5"
                     /inference="alignment:Splign:2.1.0"
     exon            1038..1291
                     /gene="Rpf1"
                     /gene_synonym="Bxdc5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acttccgttt ccgtacagct gcaaacaaca tggcgaaggc cggcgagaaa agtggcggtg
       61 gtggcaagcg aggcttgaag aggaaagcgc ccgctgaaga gcctcaagaa actgcggtcg
      121 cgagcgatgg gacggcggag agcggggtac agtccgcgaa agcggctgcc ttccccccgg
      181 gcttcagtat ctcggagatt aagaacaaac agcggcgaca cttgatgttc acgcggtgga
      241 aacagcagca gcggaaggaa aagttggcag ctaagaaaaa acttaaaagg gagagagagg
      301 ctcttggtga taaggctcca ccgaagcctg tacccaagac cattgacaac caacgcgtgt
      361 acgatgagac cacagtagac cccaatgatg aagaggtggc ttatgatgag gctacagatg
      421 aatttgcttc ttacttcaac agacagacgt ctcctaagat tcttatcaca acctcagaca
      481 gacctcatgg gagaacagta cgactctgtg agcagctctc aacagttata ccggattcac
      541 atgtttatta cagaagagga ctggctctga aaaaaattat cccacagtgc attgcaagag
      601 atttcacaga cctaatcgtt attaatgaag atcgtaaaac accaaatgga cttattttga
      661 gtcatttgcc aaatggtcca actgctcatt ttaaaatgag tagtgttcgt cttcgtaaag
      721 aaattaagcg acgaggcaaa gaccccacag aacatgtacc tgagataatt ctaaacaact
      781 ttaccacacg gctaggtcac tctatcggac gtatgtttgc ttctctcttt cctcataacc
      841 ctcaatttat tggaagacaa gttgccacgt tccacaatca gcgggattac atcttcttca
      901 ggtttcacag atacatattc aagagtgaaa agaaggtggg aattcaggaa cttggaccac
      961 gttttacctt aaaattacga tctctgcaga agggaacctt tgattccaag tatggagagt
     1021 atgaatgggt ccataagcca cgggaaatgg atacaagtag aagaaaattc catttataaa
     1081 gaacaatttt gcgggcaggc ctgtcttaaa aaacttggta attgaacaaa atgtactttt
     1141 caaaatggga ttttatttta taaatcctgt gtttgaagaa atgaccaagt gctatgagtt
     1201 tccactgcat atagtaaata taaataaata taattttatt tttgtctgaa aaattatgta
     1261 tgaaagtcat aaaagctgtt gtcattttgg aaaaaaaaaa aaaaaaaa
//
