LOCUS       XM_039103282            1769 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus retinoid isomerohydrolase RPE65
            (Rpe65), transcript variant X4, mRNA.
ACCESSION   XM_039103282
VERSION     XM_039103282.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103282.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1769
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1769
                     /gene="Rpe65"
                     /note="retinoid isomerohydrolase RPE65; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 14 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:89826"
                     /db_xref="RGD:621396"
     CDS             287..1699
                     /gene="Rpe65"
                     /codon_start=1
                     /product="retinoid isomerohydrolase isoform X3"
                     /protein_id="XP_038959210.1"
                     /db_xref="GeneID:89826"
                     /db_xref="RGD:621396"
                     /translation="MTEKRIVITEFGTCAFPDPCKNIFSRFFSYFRGVEITDNALVNI
                     YPVGEDYYACTETNFITKINPETLETIKQVDLCNYVSVNGATAHPHIESDGTVYNIGN
                     CFGKNFTVAYNIIKIPPLKADKEDPINKSEVVVQFPCSDRFKPSYVHSFGLTPNYIVF
                     VETPVKINLFKFLSSWSLWGANYMDCFESNESMGVWLHVADKKRRKYFNNKYRTSPFN
                     LFHHINTYEDNGFLIVDLCCWKGFEFVYNYLYLANLRENWEEVKRNAMKAPQPEVRRY
                     VLPLTIDKADTGRNLVTLPHTTATAILCSDETIWLEPEVLFSGPRQGKISREKLRRES
                     MIYLKILNFPVPVFCLKAFEFPQINYQKCGGKPYTYAYGLGLNHFVPDKLCKLNVKTK
                     EIWMWQEPDSYPSEPIFVSQPDALEEDDGVVLSVVVSPGAGQKPAYLLVLNAKDLSEI
                     ARAEVETNIPVTFHGLFKKP"
ORIGIN      
        1 cacttctgtt atcctccgtc agctgagggg tggagagggt tcccagagac accggcttct
       61 ccaagaagga ttagattgca tacaaaaaag ccctggctaa gaacttgctt ccttgtccta
      121 cagctggtac cagaattctc tctagtcttc actggaagaa aatgtctatc caaattgaac
      181 accctgctgg tggctacaag aaactatttg aaactgtgga ggaactgtcc acaccactaa
      241 cagctcatgt cacagattca tccgcactga tgcttatgtt cgagcaatga ccgagaagag
      301 gattgtcata acagaatttg gcacctgtgc ttttccagac ccctgcaaga atatattttc
      361 caggtttttt tcttactttc gaggagtaga gattactgac aatgcccttg taaatattta
      421 cccagtggga gaagattact atgcatgcac agagaccaac tttatcacaa agattaaccc
      481 agagaccttg gagactatta agcaggttga tctttgcaac tatgtttccg tcaatggtgc
      541 cactgctcat ccacatattg aaagtgatgg aacagtttat aacattggca attgctttgg
      601 gaaaaatttt acagttgcct acaacattat taagatccct ccactgaaag cagacaagga
      661 agacccaata aacaagtcag aagttgttgt gcagttccca tgcagtgatc ggttcaagcc
      721 atcttatgta cacagttttg gtctgactcc caactatatc gtttttgtgg agactccagt
      781 caaaattaac cttttcaagt ttctttcttc gtggagtctt tggggagcca actacatgga
      841 ctgtttcgag tccaatgaaa gcatgggggt ttggcttcat gttgctgaca aaaaaagaag
      901 aaaatatttc aataacaaat acaggacctc ccctttcaat ctcttccatc atatcaatac
      961 ttatgaagat aatgggtttc tgattgtgga tctctgttgc tggaaagggt ttgaatttgt
     1021 ttataattac ttatatttag ctaatttacg tgagaattgg gaagaagtaa aacgaaatgc
     1081 tatgaaagct cctcagcctg aagtcaggag atacgttctt cctttgacaa ttgacaaggc
     1141 tgacacaggc agaaatttag tcacacttcc ccatacaact gccacagcca ttctgtgcag
     1201 tgatgagacc atatggctgg aacctgaagt cctcttttca gggccccgtc aaggtaagat
     1261 atctagagaa aagctgagaa gggaatcaat gatctactta aagatattga attttcctgt
     1321 gcctgtgttc tgtcttaaag cctttgaatt tcctcaaatc aattaccaga aatgtggggg
     1381 gaaaccttac acttatgcat acggacttgg attgaatcac tttgttccag acaagttgtg
     1441 taagctgaat gtcaaaacta aagaaatctg gatgtggcaa gaaccggatt cttacccatc
     1501 tgaacccatc tttgtttctc aaccggatgc tctggaagaa gatgatggtg tagttctgag
     1561 tgtggtggtg agtcctgggg caggacaaaa gcctgcatat ctcctggttc tgaatgccaa
     1621 agacttgagt gaaattgcca gggctgaagt ggagactaat attcctgtga ccttccatgg
     1681 actgttcaaa aaaccatgaa catattccag ggactggaga gaagactcag cagttaagag
     1741 cactgactgc tcttcgagag atcctgagt
//
