LOCUS       XM_039091801            2175 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RNA polymerase II associated protein 2
            (Rpap2), transcript variant X5, mRNA.
ACCESSION   XM_039091801
VERSION     XM_039091801.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2175
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2175
                     /gene="Rpap2"
                     /gene_synonym="RGD1309034"
                     /note="RNA polymerase II associated protein 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 12 ESTs, 1 long SRA read, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     50 samples with support for all annotated introns"
                     /db_xref="GeneID:305120"
                     /db_xref="RGD:1309034"
     CDS             100..1830
                     /gene="Rpap2"
                     /gene_synonym="RGD1309034"
                     /codon_start=1
                     /product="RNA polymerase II subunit B1 CTD phosphatase
                     Rpap2 isoform X4"
                     /protein_id="XP_038947729.1"
                     /db_xref="GeneID:305120"
                     /db_xref="RGD:1309034"
                     /translation="MADSAVPYSLGPSARASSTHRVATGTKQTSALKRRDASKRQAEL
                     EAALQRKVESERRAVRLVEQLLEENITEEFLKECIPKQKYRISTKTNKVYDITERKSF
                     CSNFCYKASKFFEAQIPKTPVWVREEERPPEFQLLKKGQSGCSGEVVQFFRDAVTAAD
                     VDAYGAFDAQCEPASSSTWSERASDERASDEEGPGFVSSLLPGNRPKAVGTKPQPHRQ
                     SSTVKKKAAQKMTSKHGEQTVSEVTEQLSNCRLDSQEKVATCKLPAKKENTQISSPGP
                     LCDRLNTSTVSENKHSVSQVTLVGISKKSAEHFRSKFAKSNPGSGSASGLVQVRPEVA
                     KANLLRVLKDTLTEWKTDETLKFLYGQDHGSVCLQPSAASGPDEELDEDDISCQAQNT
                     LDETLPFRGSDTAIKPLPSYESLKKETEMLNLRVREFYRGRCVLNEDSTKSQDSKENE
                     LQRDPSFPLIDSSSQNQIRRRIVLEKLSKVLPGLLGPLQITMGDIYTELKNLVQTFRL
                     SNRNIIHKPVEWTLIAVVLLSLLTPILGIQKHSPKNVVFTQFIATLLTELHLKCEDLE
                     NLAMIFRTSC"
ORIGIN      
        1 ccctgggccc gcccccagct tggttcaggg cgatgtgaaa ggaggtagaa cctcgcggct
       61 gctgagctgt cccgccccta gcttctgacg gcatttccca tggcggactc tgctgttcct
      121 tactctctgg gcccaagtgc ccgggcttcc agcacccacc gagtcgctac cggtactaaa
      181 cagaccagtg ccctgaaacg aagagatgcg tctaaaagac aagcggaact ggaagctgcc
      241 ctgcaaagga aggtggagtc tgagaggaga gctgtacgcc tcgtagagca gctcctggag
      301 gagaacatca cagaagaatt cctgaaggag tgtataccaa aacagaaata ccggatttct
      361 actaaaacca ataaagtcta tgatattact gaaagaaagt ctttctgcag caatttttgt
      421 tacaaagcat ctaaattttt tgaagcacag attcccaaaa ctccagtatg ggttcgagag
      481 gaagagaggc ctcctgaatt tcagctgctg aagaaaggac aaagtggctg ttctggagag
      541 gtcgtacagt tcttcagaga cgccgttaca gcagcagatg tcgatgctta tggtgccttt
      601 gatgcacagt gtgaacctgc ttcctccagc acttggagcg agcgtgccag cgacgagcgt
      661 gccagcgatg aggaggggcc aggctttgtt tcttctcttc tcccaggaaa cagaccgaag
      721 gccgtgggca caaaaccaca gccacacaga caaagcagca ccgtgaagaa gaaggctgct
      781 cagaaaatga cctccaagca cggagaacag accgtgtcag aggtcacgga gcagttgtct
      841 aattgtagat tagatagtca ggagaaagta gctacttgta aacttcctgc aaagaaagaa
      901 aacactcaga tttcttcacc tggccctttg tgtgacagat taaatacttc aacagtttct
      961 gaaaataaac acagtgtatc acaagttact cttgtgggga taagcaagaa gagtgctgag
     1021 catttcagga gcaaatttgc caaatctaac ccagggtctg ggtcagcctc tggtttggtg
     1081 caggtgcgtc ctgaggtcgc aaaggcaaat ttactccgag ttctaaagga caccctgact
     1141 gaatggaaga cagacgaaac actgaagttt ttatatggcc aagaccatgg ttctgtgtgc
     1201 ctgcaaccct ctgcagcctc tgggcctgat gaagaacttg atgaagatga cataagctgt
     1261 caagctcaga acaccttgga tgagacactc cccttcagag gctcagatac agccattaag
     1321 ccactgccaa gttatgagag cctgaaaaag gaaacagaga tgttgaacct gagggtcagg
     1381 gagttctaca gaggacgctg tgttttaaat gaagacagta ccaagtctca ggactcaaaa
     1441 gagaatgagc ttcagcgtga tcccagcttc cccctgattg attcgagttc ccagaaccag
     1501 attagaagac ggattgttct tgaaaaattg agcaaagtat tgcccggcct tttgggtcct
     1561 cttcagatta caatgggaga tatttacact gaacttaaaa accttgttca gactttcaga
     1621 ttatcaaata gaaacattat ccacaaacct gtggagtgga ctttaatcgc cgtggtcttg
     1681 ctgtcactgt tgacaccaat tctcggcatt cagaagcatt ctccaaaaaa tgtggtattt
     1741 acacagttta tagccaccct gctgacagaa ttgcatctaa aatgtgaaga tctggaaaac
     1801 ttagccatga tatttagaac cagctgctaa caatgatata actttggaag acagaagatg
     1861 aatgcttctc accataccta gagttttagc cagttagggt ccatgggtga ctgatgacta
     1921 agtgtgtaac ttcctcagac gcagaaaagc catgccccag caagaaggaa gctcttacat
     1981 ctagaccctt gaaacacagg atatgaggga aaaatgaagt cttaaattga aatttgagtg
     2041 aatgttagag aaaatgtaat tattcttttt gattatagcc aaaacttaag aaaatgatat
     2101 ctgtggcata ttgtaaactc tatcatacaa ataacagcaa agttagatca ataaatgtga
     2161 tcttcagtga agtca
//
